Factsheet for Solyc08g079440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 2
endoplasmic reticulum 2
golgi 3
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	97.75	97.53
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	41.57	78.39
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	72.36	75.06
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	72.36	74.88
Solyc01g091200.2.1	Tomato	nucleus	72.81	74.48
AT4G12250.1	Thale cress	cytosol, endoplasmic reticulum, golgi	72.13	73.62
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	64.04	73.45
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	71.69	73.33
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	71.46	73.1
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	71.46	73.1
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	71.24	73.04
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	70.34	72.96
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	70.34	72.96
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	71.24	72.87
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	71.24	72.87
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	70.11	72.73
Solyc03g083550.1.1	Tomato	golgi	64.94	71.18
Solyc07g006220.1.1	Tomato	nucleus	62.92	65.88
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	63.6	65.81
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	62.92	64.81
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	64.94	62.96
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	60.0	61.66
Solyc09g092330.1.1	Tomato	nucleus	60.9	59.96
Zm00001d047915_P001	Maize	plastid	60.9	56.58
EER95171	Sorghum	plastid	60.67	56.25
Zm00001d028427_P001	Maize	plastid	60.45	56.16
Os03t0249500-01	Rice	plastid	60.9	55.99
TraesCS4A01G080300.1	Wheat	plastid	59.78	55.65
TraesCS4D01G224000.1	Wheat	plastid	59.55	54.98
TraesCS4B01G223700.1	Wheat	plastid	59.55	53.97
HORVU4Hr1G063010.1	Barley	peroxisome	59.55	51.56
Solyc08g080570.2.1	Tomato	cytosol	21.57	27.35
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	20.9	26.72
Solyc08g082440.2.1	Tomato	cytosol, golgi	20.22	25.64
Solyc12g006410.1.1	Tomato	unclear	21.8	24.31
Solyc07g043550.2.1	Tomato	cytosol, unclear	16.18	23.84
Solyc02g030230.2.1	Tomato	mitochondrion	21.8	23.32
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	21.57	23.02
Solyc07g062130.2.1	Tomato	extracellular, unclear	21.57	14.24
Solyc08g069110.2.1	Tomato	unclear	20.22	13.82
Solyc10g007480.2.1	Tomato	nucleus	17.08	12.88
Solyc08g080140.2.1	Tomato	extracellular	3.37	4.98

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016857
UniProt:K4CNU4	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF16363	PRINTS:PR01713
PANTHER:PTHR43574	PANTHER:PTHR43574:SF21	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc08g079440.1	EnsemblPlants:Solyc08g079440.1.1	TMHMM:TMhelix
UniParc:UPI000276B108	SEG:seg	:	:	:	:

Description

UDP-glucuronate 4-epimerase 5 [Source:Projected from Arabidopsis thaliana (AT4G12250) UniProtKB/Swiss-Prot;Acc:Q9STI6]

Coordinates

chr8:+:62963988..62965325

Molecular Weight (calculated)

49411.0 Da

IEP (calculated)

10.659

GRAVY (calculated)

-0.188

Length

445 amino acids

Sequence
(BLAST)

001: MTQLKPILMH LDSIPSTPGK FKPDKSSPYN LYRLRFHPTL FPRFTLWSFF FIFFIVLLIF FSSPSNPTAG NSRRSLKNSL SPSPALGPNW ERRVRASARP
101: RSKTGFTVLV TGAAGFVGTH VSLGLKRRGD GVLGLDNFNQ YYDVGLKKAR QSLLERSGIM VVKGDINDAV LLRKLFDAVA FTHVMHMAAQ AGVRYAMQNP
201: GSYVHSNIAG FVSLLEACKM ANPQPSIVWA SSSSVYGLNS KVPFSEKDRT DQPASLYAAT KKAGEEIAHT YNHIYGLSIT GLRFFTVYGP WGRPDMAYFF
301: FTKDILRGKE IKIFETSDQG SVARDFTYVD DVVKGCLGAL DTAKKSTGSG GKKKGAAQLR IFNLGNTKPV PVGRLVSILE KLLKVKAKKK VIQMPRNGDV
401: PFTHANITLA HTELGYKPTT DLEMGLKKFV KWYVSYYGSK KKSSW

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.