Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 4
- cytosol 1
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
|
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g043550.2.1 | Tomato | cytosol, unclear | 69.92 | 92.38 |
| AT2G34850.2 | Thale cress | cytosol | 47.12 | 79.66 |
| Os04t0618200-02 | Rice | golgi | 75.94 | 77.49 |
| GSMUA_Achr11P... | Banana | cytosol, golgi | 74.44 | 75.96 |
| GSMUA_Achr3P23390_001 | Banana | mitochondrion | 78.45 | 75.06 |
| Os08t0129700-01 | Rice | mitochondrion | 75.44 | 74.14 |
| GSMUA_Achr11P... | Banana | mitochondrion | 77.19 | 73.86 |
| Solyc02g030230.2.1 | Tomato | mitochondrion | 76.69 | 73.56 |
| GSMUA_Achr8P33320_001 | Banana | mitochondrion | 76.69 | 73.38 |
| EER95001 | Sorghum | mitochondrion | 74.69 | 73.22 |
| VIT_03s0017g00980.t01 | Wine grape | golgi | 76.44 | 73.14 |
| TraesCS7D01G307500.1 | Wheat | golgi, mitochondrion | 74.19 | 73.09 |
| HORVU7Hr1G074300.2 | Barley | golgi | 74.19 | 73.09 |
| KRH36892 | Soybean | golgi, mitochondrion | 75.69 | 72.77 |
| KRH11871 | Soybean | golgi, plastid | 75.69 | 72.77 |
| CDY09555 | Canola | mitochondrion | 76.44 | 72.62 |
| TraesCS7A01G311100.1 | Wheat | golgi | 73.68 | 72.59 |
| Bra032409.1-P | Field mustard | mitochondrion | 76.19 | 72.55 |
| CDY02312 | Canola | mitochondrion | 76.19 | 72.38 |
| KRH59194 | Soybean | golgi, mitochondrion | 75.44 | 72.36 |
| HORVU2Hr1G104110.1 | Barley | mitochondrion, plastid | 74.69 | 72.33 |
| KXG27129 | Sorghum | mitochondrion, plastid | 75.19 | 72.29 |
| KRH43065 | Soybean | golgi, mitochondrion, plastid | 75.19 | 72.12 |
| AT1G30620.4 | Thale cress | golgi, mitochondrion | 75.69 | 72.08 |
| CDY52524 | Canola | golgi | 76.44 | 71.93 |
| TraesCS7B01G210700.2 | Wheat | golgi | 74.19 | 71.67 |
| TraesCS2D01G460600.1 | Wheat | mitochondrion, plastid | 73.93 | 71.6 |
| TraesCS2B01G482000.1 | Wheat | golgi | 73.93 | 71.6 |
| GSMUA_Achr4P31860_001 | Banana | mitochondrion | 74.44 | 71.39 |
| TraesCS2A01G460400.1 | Wheat | unclear | 73.68 | 71.36 |
| Solyc02g069580.2.1 | Tomato | golgi, mitochondrion | 74.44 | 71.22 |
| CDY31644 | Canola | golgi | 75.44 | 70.99 |
| Os07t0139400-01 | Rice | plasma membrane | 73.43 | 69.6 |
| TraesCS5D01G298700.1 | Wheat | mitochondrion | 72.93 | 69.12 |
| HORVU5Hr1G077110.3 | Barley | mitochondrion | 72.68 | 68.88 |
| TraesCS5A01G291300.1 | Wheat | golgi | 72.68 | 68.88 |
| TraesCS5B01G290300.1 | Wheat | mitochondrion | 72.43 | 68.65 |
| EER95854 | Sorghum | mitochondrion, plastid | 73.43 | 68.14 |
| Bra005387.1-P | Field mustard | golgi, mitochondrion | 75.94 | 66.74 |
| Solyc12g055930.1.1 | Tomato | cytosol, extracellular, golgi | 37.59 | 43.1 |
| Solyc08g082440.2.1 | Tomato | cytosol, golgi | 35.34 | 40.17 |
| Solyc08g080570.2.1 | Tomato | cytosol | 34.34 | 39.03 |
| Zm00001d010657_P001 | Maize | golgi, plastid, vacuole | 32.08 | 36.99 |
| Zm00001d017999_P002 | Maize | mitochondrion | 26.82 | 34.41 |
| Solyc08g079440.1.1 | Tomato | nucleus | 24.31 | 21.8 |
| Solyc03g083550.1.1 | Tomato | golgi | 21.55 | 21.18 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 22.56 | 20.79 |
| Solyc09g092330.1.1 | Tomato | nucleus | 22.81 | 20.13 |
| Solyc05g050990.1.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion | 21.8 | 20.0 |
| Solyc12g010540.1.1 | Tomato | endoplasmic reticulum | 21.55 | 19.91 |
| Solyc01g091200.2.1 | Tomato | nucleus | 21.55 | 19.77 |
| Solyc07g006220.1.1 | Tomato | nucleus | 21.05 | 19.76 |
| Solyc10g018260.1.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 21.3 | 19.54 |
| Solyc08g069110.2.1 | Tomato | unclear | 22.06 | 13.52 |
| Solyc07g062130.2.1 | Tomato | extracellular, unclear | 20.55 | 12.17 |
| Solyc10g007480.2.1 | Tomato | nucleus | 14.79 | 10.0 |
| Solyc08g080140.2.1 | Tomato | extracellular | 3.51 | 4.65 |
Protein Annotations
| KEGG:00052+5.1.3.2 | KEGG:00520+5.1.3.2 | MapMan:3.13.7.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003978 | GO:GO:0005975 | GO:GO:0006012 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016853 | UniProt:K4DBH8 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | PFAM:PF16363 | PANTHER:PTHR43349 |
| PANTHER:PTHR43349:SF14 | SUPFAM:SSF51735 | EnsemblPlantsGene:Solyc12g006410.1 | EnsemblPlants:Solyc12g006410.1.1 | TIGRFAMs:TIGR01179 | TMHMM:TMhelix |
| InterPro:UDP_G4E | UniParc:UPI000276A7C0 | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:898344..901102
Molecular Weight (calculated)
44252.4 Da
IEP (calculated)
9.379
GRAVY (calculated)
-0.117
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLVVSKRR NNITRKLLLA AGITAICFLI FRTSPGFSSF MKFAQREPGV THVLVTGGAG FIGSHATVRL LKDSYRVTIV DNLSRGNMGA VKVLQELFPE
101: PGRLQFIYAD LGDAVAVSIT FSFDLSVNKI FKRNAFDAVM HFAAVAYVGE STQEPLRYYH NITSNTLLLV KAMATYGVKT LIYSSTCATY GEPEKMPITE
201: ETPQAPINPY GKAKKMAEDI ILDFSKTSDI AVMILRYFNV IGSDPEGKLG EAPRPELREQ GRISGACFDA ARGIIPGLKI RGVDYSTPDG TCIRDYIDVT
301: DLIDAHVKAL EHARPSKVGI YNVGTGRGSS VKQFVEACKR ATGVNIKVEY LTRRPGDYAE VYSDPSKIRH ELNWIARYTL EESLAIAWRW QKAHRNGYN
101: PGRLQFIYAD LGDAVAVSIT FSFDLSVNKI FKRNAFDAVM HFAAVAYVGE STQEPLRYYH NITSNTLLLV KAMATYGVKT LIYSSTCATY GEPEKMPITE
201: ETPQAPINPY GKAKKMAEDI ILDFSKTSDI AVMILRYFNV IGSDPEGKLG EAPRPELREQ GRISGACFDA ARGIIPGLKI RGVDYSTPDG TCIRDYIDVT
301: DLIDAHVKAL EHARPSKVGI YNVGTGRGSS VKQFVEACKR ATGVNIKVEY LTRRPGDYAE VYSDPSKIRH ELNWIARYTL EESLAIAWRW QKAHRNGYN
001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY
Arabidopsis Description
MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.