Factsheet for VIT_03s0017g00980.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
cytosol 1
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G34850.2	Thale cress	cytosol	48.2	85.17
Solyc07g043550.2.1	Tomato	cytosol, unclear	61.39	84.77
VIT_10s0003g05640.t01	Wine grape	golgi	82.49	82.3
Bra032409.1-P	Field mustard	mitochondrion	80.34	79.95
CDY02312	Canola	mitochondrion	80.34	79.76
CDY09555	Canola	mitochondrion	80.34	79.76
KRH43065	Soybean	golgi, mitochondrion, plastid	78.9	79.09
AT1G30620.4	Thale cress	golgi, mitochondrion	79.38	79.0
PGSC0003DMT400041159	Potato	golgi, mitochondrion	73.38	78.87
KRH11871	Soybean	golgi, plastid	78.42	78.8
KRH36892	Soybean	golgi, mitochondrion	78.18	78.55
CDY52524	Canola	golgi	79.86	78.54
KRH59194	Soybean	golgi, mitochondrion	77.94	78.12
CDY31644	Canola	golgi	78.9	77.59
Solyc12g006410.1.1	Tomato	unclear	73.14	76.44
Bra005387.1-P	Field mustard	golgi, mitochondrion	79.38	72.91
VIT_02s0025g01560.t01	Wine grape	golgi	35.01	41.95
VIT_02s0025g01580.t01	Wine grape	golgi	35.01	41.95
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	32.85	39.6
Zm00001d017999_P002	Maize	mitochondrion	28.78	38.59
VIT_02s0025g04210.t01	Wine grape	cytosol	31.65	37.71
VIT_15s0048g00330.t01	Wine grape	plastid	21.1	20.61
VIT_16s0022g01450.t01	Wine grape	mitochondrion	19.9	20.34
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	18.7	20.1
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	21.58	19.96
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	20.62	19.86
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	20.38	19.54
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	20.86	18.71
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	10.55	18.64
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	21.82	13.85
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	21.34	13.19
VIT_02s0025g04610.t01	Wine grape	cytosol	3.84	5.3

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	EntrezGene:100250343	wikigene:100250343	MapMan:3.13.7.1	Gene3D:3.40.50.720
Gene3D:3.90.25.10	ProteinID:CBI34051	ProteinID:CBI34051.3	UniProt:D7TU77	EMBL:FN596248	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005575	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	EntrezGene:LOC100250343	wikigene:LOC100250343
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43349	PANTHER:PTHR43349:SF14	SUPFAM:SSF51735
TIGRFAMs:TIGR01179	TMHMM:TMhelix	InterPro:UDP_G4E	UniParc:UPI0001985B45	ArrayExpress:VIT_03s0017g00980	EnsemblPlantsGene:VIT_03s0017g00980
EnsemblPlants:VIT_03s0017g00980.t01	unigene:Vvi.17781	RefSeq:XP_002264946	RefSeq:XP_002264946.1	RefSeq:XP_010648159.1	RefSeq:XP_010648160.1
RefSeq:XP_010648161.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:16336060..16343577

Molecular Weight (calculated)

46061.5 Da

IEP (calculated)

9.701

GRAVY (calculated)

-0.286

Length

417 amino acids

Sequence
(BLAST)

001: MLNYSRNRAH SKPNRSFSLE AMDLADSRRK SNVTGKVLMA ISLITLCIII LKRSPNFSSP SPFSHRQPGV THVLVTGGAG YIGSHAALRL LKDSHRVTIV
101: DNLSRGNLGA VKVLQQLFPD PAQLQFIYAD LGDAKAVNKI FSENEFDAVM HFAAVAYVGE STMDPLRYYH NITSNTLMVL KAMAAHGVKT LIYSSTCATY
201: GEPKKMPITE GTPQVPINPY GKAKKMAEDM IIDFSKNSDM AVMVLRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ALGIIPGLKV KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL AHAKPKKVGI YNVGTGKGRS VKEFVEACKK ATGVDIKVEY LDRRPGDYAE VYSDPSKILR ELNWTAQYTN LQESLQTAWR
401: WQKSHRNGYG TRMSLHS

Best Arabidopsis Sequence Match ( AT1G30620.2 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.