CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02312	Canola	mitochondrion	99.52	99.52
AT1G30620.4	Thale cress	golgi, mitochondrion	95.95	96.18
CDY52524	Canola	golgi	88.81	87.97
CDY31644	Canola	golgi	88.1	87.26
Solyc07g043550.2.1	Tomato	cytosol, unclear	61.9	86.09
CDY71965	Canola	cytosol, mitochondrion	47.62	84.03
KRH36892	Soybean	golgi, mitochondrion	80.95	81.93
CDX78998	Canola	mitochondrion	80.0	81.75
CDX82768	Canola	mitochondrion	79.76	81.51
KRH43065	Soybean	golgi, mitochondrion, plastid	80.71	81.49
KRH59194	Soybean	golgi, mitochondrion	80.71	81.49
KRH11871	Soybean	golgi, plastid	80.48	81.45
CDY29113	Canola	golgi	79.52	81.07
Os04t0618200-02	Rice	golgi	75.24	80.82
PGSC0003DMT400041159	Potato	golgi, mitochondrion	74.52	80.67
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	79.05	80.58
VIT_03s0017g00980.t01	Wine grape	golgi	79.76	80.34
GSMUA_Achr3P23390_001	Banana	mitochondrion	79.76	80.34
CDY13102	Canola	golgi	78.57	80.1
TraesCS2A01G460400.1	Wheat	unclear	78.33	79.85
TraesCS2B01G482000.1	Wheat	golgi	78.33	79.85
GSMUA_Achr11P...	Banana	cytosol, golgi	74.29	79.8
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	78.1	79.61
GSMUA_Achr11P...	Banana	mitochondrion	78.81	79.38
CDY49015	Canola	golgi	77.38	78.88
Os08t0129700-01	Rice	mitochondrion	76.19	78.82
EER95001	Sorghum	mitochondrion	75.95	78.38
HORVU7Hr1G074300.2	Barley	golgi	75.48	78.27
CDY49498	Canola	golgi	76.67	78.16
Os07t0139400-01	Rice	plasma membrane	78.33	78.15
KXG27129	Sorghum	mitochondrion, plastid	77.14	78.07
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	75.24	78.02
GSMUA_Achr8P33320_001	Banana	mitochondrion	77.14	77.7
GSMUA_Achr4P31860_001	Banana	mitochondrion	76.9	77.64
TraesCS7A01G311100.1	Wheat	golgi	74.76	77.53
HORVU5Hr1G077110.3	Barley	mitochondrion	76.9	76.72
TraesCS7B01G210700.2	Wheat	golgi	75.24	76.51
TraesCS5A01G291300.1	Wheat	golgi	76.67	76.48
Solyc12g006410.1.1	Tomato	unclear	72.62	76.44
TraesCS5B01G290300.1	Wheat	mitochondrion	76.43	76.25
TraesCS5D01G298700.1	Wheat	mitochondrion	76.43	76.25
EER95854	Sorghum	mitochondrion, plastid	76.9	75.12
CDY47846	Canola	golgi	35.71	43.73
CDY08378	Canola	golgi	35.71	43.48
CDY47611	Canola	golgi	35.48	42.82
CDX86828	Canola	golgi	35.24	42.65
CDY03506	Canola	cytosol, golgi	35.24	42.53
CDY40862	Canola	cytosol, golgi	35.0	42.36
CDY50431	Canola	cytosol	35.0	42.24
CDY69000	Canola	cytosol	32.38	40.6
Zm00001d017999_P002	Maize	mitochondrion	30.0	40.51
CDY31278	Canola	cytosol	33.33	39.89
CDY21065	Canola	cytosol	33.33	39.89
CDY47346	Canola	cytosol	32.38	38.75
CDY49193	Canola	cytosol	32.38	38.75
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	31.19	37.86
CDY49495	Canola	cytosol	6.43	27.55
CDY60264	Canola	plastid	34.29	23.57
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	22.62	22.14
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	22.62	21.84
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	22.14	21.68
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	22.38	21.66
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	23.57	21.52
CDY64583	Canola	endoplasmic reticulum	23.57	21.52
CDY70926	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.9	21.45
CDY28188	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.9	21.45
CDX92990	Canola	endoplasmic reticulum	23.1	21.27
CDX77481	Canola	endoplasmic reticulum	22.86	21.19
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.67	21.16
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.67	21.16
CDY53207	Canola	endoplasmic reticulum	22.86	21.1
CDX85133	Canola	endoplasmic reticulum	22.86	21.05
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	20.95	20.47
CDY67756	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.19	20.46
CDX95646	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.19	20.46
CDY25850	Canola	cytosol, mitochondrion, peroxisome	19.05	18.69
CDY40003	Canola	cytosol, mitochondrion, plastid	21.19	13.28
CDY35137	Canola	cytosol, mitochondrion, plastid	21.19	13.28
CDY24092	Canola	cytosol, mitochondrion, peroxisome	20.95	13.23
CDY45116	Canola	cytosol, mitochondrion, peroxisome	20.95	13.23
CDY60210	Canola	cytosol, mitochondrion, peroxisome	20.71	13.02
CDX88455	Canola	cytosol, peroxisome, plastid	21.9	13.01
CDX97601	Canola	cytosol, mitochondrion, plastid	19.52	12.69
CDX98494	Canola	cytosol, mitochondrion, plastid	19.52	12.69
CDY20084	Canola	cytosol, mitochondrion, peroxisome	19.05	12.42
CDY32340	Canola	cytosol, mitochondrion, peroxisome	18.81	12.29
CDX81794	Canola	plastid	6.67	8.07
CDY71423	Canola	cytosol, nucleus	5.48	5.34
CDX98052	Canola	cytosol	3.33	4.33
CDY72469	Canola	cytosol	1.19	3.79
CDY57072	Canola	cytosol, extracellular, peroxisome	2.86	3.72
CDY45969	Canola	cytosol	2.38	3.37
CDY45471	Canola	cytosol	2.38	3.37

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:A0A078F560
UniProt:A0A078F560	EnsemblPlants:CDY09555	ProteinID:CDY09555	ProteinID:CDY09555.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853
EnsemblPlantsGene:GSBRNA2T00031162001	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43349	PANTHER:PTHR43349:SF14
MetaCyc:PWY-3821	MetaCyc:PWY-6317	MetaCyc:PWY-6397	MetaCyc:PWY-6527	MetaCyc:PWY-7328	MetaCyc:PWY-7344
SUPFAM:SSF51735	TIGRFAMs:TIGR01179	InterPro:UDP_G4E	UniPathway:UPA00214	UniParc:UPI0004EF2792	SEG:seg

Description

BnaC05g23640DBnaC05g23640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F560]

Coordinates

chrLK031997:-:463154..466392

Molecular Weight (calculated)

46389.6 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.271

Length

420 amino acids

Sequence
(BLAST)

001: MFNFTRARSQ ARQNRSLSLG GLDYADPKKK NNYLGKFLLT ASLTALCIFM LKQSPTFNTP SVFSIHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLGA VKVLQELFPE PGRLQFIYAD LGDAKAVNKI FSENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDTMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSNM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTSDG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKVGS SVKEFVEACK KATGVEIKID YLPRRPGDYA EVYSDPSKIR KELNWTAKHT NLKESLETAW
401: RWQKLHRNGY GSTSSSVSVY

Best Arabidopsis Sequence Match ( AT1G30620.2 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.