CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	99.22	99.22
CDY32340	Canola	cytosol, mitochondrion, peroxisome	98.45	98.6
CDX98494	Canola	cytosol, mitochondrion, plastid	95.5	95.2
CDX97601	Canola	cytosol, mitochondrion, plastid	95.34	95.05
AT3G14790.2	Thale cress	mitochondrion	94.57	91.3
CDY60210	Canola	cytosol, mitochondrion, peroxisome	91.3	88.02
CDY45116	Canola	cytosol, mitochondrion, peroxisome	90.53	87.67
CDY24092	Canola	cytosol, mitochondrion, peroxisome	90.37	87.52
CDY25850	Canola	cytosol, mitochondrion, peroxisome	56.37	84.81
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	84.01	83.36
CDY71423	Canola	cytosol, nucleus	55.28	82.6
CDY40003	Canola	cytosol, mitochondrion, plastid	85.25	81.94
CDY35137	Canola	cytosol, mitochondrion, plastid	85.25	81.94
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	79.97	80.97
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	83.7	80.21
Os03t0278200-01	Rice	nucleus, plasma membrane	83.85	80.0
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	83.39	79.91
EER95086	Sorghum	cytosol, mitochondrion, plastid	83.39	79.91
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	76.71	79.55
TraesCS4A01G099200.1	Wheat	cytosol	83.23	79.41
CDX88455	Canola	cytosol, peroxisome, plastid	86.8	79.07
Zm00001d028654_P002	Maize	cytosol	82.3	78.87
CDY45969	Canola	cytosol	36.34	78.79
TraesCS4D01G206000.1	Wheat	mitochondrion	83.23	78.59
TraesCS4B01G205100.3	Wheat	mitochondrion	83.07	78.45
CDY45471	Canola	cytosol	36.02	78.11
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	77.48	75.95
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	75.62	74.46
Solyc08g069110.2.1	Tomato	unclear	75.16	74.35
HORVU4Hr1G059120.2	Barley	plastid	82.92	73.86
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	68.94	73.39
KRH16155	Soybean	cytosol	73.6	72.37
KRH04933	Soybean	cytosol, mitochondrion, plastid	72.36	72.36
CDY57072	Canola	cytosol, extracellular, peroxisome	35.71	71.21
CDX98052	Canola	cytosol	35.56	70.9
CDX81794	Canola	plastid	35.09	65.13
CDY72469	Canola	cytosol	12.27	59.85
CDY71965	Canola	cytosol, mitochondrion	9.47	25.63
CDY47846	Canola	golgi	12.89	24.2
CDY08378	Canola	golgi	12.73	23.77
CDY50431	Canola	cytosol	12.58	23.28
CDY21065	Canola	cytosol	12.58	23.08
CDY31278	Canola	cytosol	12.58	23.08
CDY47611	Canola	golgi	12.42	22.99
CDY03506	Canola	cytosol, golgi	12.42	22.99
CDX86828	Canola	golgi	12.11	22.48
CDY40862	Canola	cytosol, golgi	12.11	22.48
CDY69000	Canola	cytosol	11.65	22.39
CDY47346	Canola	cytosol	12.11	22.22
CDY49193	Canola	cytosol	12.11	22.22
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	13.82	20.51
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	13.82	20.46
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	13.51	20.28
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	13.51	20.28
CDX78998	Canola	mitochondrion	12.73	19.95
CDY67756	Canola	cytosol, endoplasmic reticulum, golgi, plastid	13.35	19.77
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	13.2	19.77
CDX82768	Canola	mitochondrion	12.58	19.71
CDX77481	Canola	endoplasmic reticulum	13.82	19.65
CDX95646	Canola	cytosol, endoplasmic reticulum, golgi, plastid	13.2	19.54
CDX92990	Canola	endoplasmic reticulum	13.82	19.52
CDX85133	Canola	endoplasmic reticulum	13.82	19.52
CDY53207	Canola	endoplasmic reticulum	13.66	19.34
CDY64583	Canola	endoplasmic reticulum	13.66	19.13
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	13.66	19.13
CDY70926	Canola	cytosol, endoplasmic reticulum, golgi, plastid	12.73	19.11
CDY28188	Canola	cytosol, endoplasmic reticulum, golgi, plastid	12.73	19.11
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	12.73	19.07
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	12.73	19.07
CDY09555	Canola	mitochondrion	12.42	19.05
CDY02312	Canola	mitochondrion	12.42	19.05
CDY29113	Canola	golgi	12.11	18.93
CDY13102	Canola	golgi	12.11	18.93
CDY49498	Canola	golgi	12.11	18.93
CDY49015	Canola	golgi	12.11	18.93
CDY31644	Canola	golgi	12.27	18.63
CDY52524	Canola	golgi	12.27	18.63
CDY49495	Canola	cytosol	2.17	14.29
CDY60264	Canola	plastid	12.73	13.42

Protein Annotations

EnsemblPlants:CDY20084	EnsemblPlantsGene:GSBRNA2T00009933001	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363	ProteinID:CDY20084
ProteinID:CDY20084.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0004EE19D2	UniProt:A0A078G3W5	MapMan:3.13.6.1

Description

BnaA01g29180DBnaA01g29180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3W5]

Coordinates

chrLK032103:+:80222..82692

Molecular Weight (calculated)

72553.3 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.431

Length

644 amino acids

Sequence
(BLAST)

001: MATYKPKNIL ITGAAGFIAS HVANRLVRTY PDYKIVVLDK LDYCSNLKNL NPSKSSPNFK FVKGDIASDD LTHVDNSFGN SFEFTKNNIY GTHVLLEACK
101: VTGQQIRRFI HVSTDEVYGE TDEDASVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK LIPKFMLLAM NGKPLPIHGD
201: GSNVRSYLYC EDVAEAFEVV LHKGEVNHVY NIGTTRERRV IDVANDISKL FGTDPDSTIQ FVENRPFNDQ RYFLDDQKLK KLGWSERTTW EEGLRKTMEW
301: YTENPDWWGD VTGALLPHPR MLMMPGDRLC DNCDDEHKDV ADGNQTFTVV TPSGDNKTPF KFLIYGKTGW LGGLLGKLCE KQGIAYEYGK GRLEDRASVM
401: ADVRSVKPTH VFNAAGVTGR PNVDWCESHK TETIRANVAG TLTLADVCRE NGLLMMNFAT GCIFEYDAAH PEGSGIGFKE EDKPNFTGSF YSKTKAMVEE
501: LLREYDNVCT LRVRMPISSD LNNPRNFITK ISRYNKVVNI PNSMTILDEL LPISIEMAKR NLRGVWNFTN PGVVSHNEIL EMYKSYIEPG FKWSNFTLEE
601: QAKVIVAARS NNEMDGAKLS KEFPEMLSIK DSLIKYVFEP NKRT

Best Arabidopsis Sequence Match ( AT1G53500.1 )
(BLAST)

001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT

Arabidopsis Description

RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.