CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00551
KRH04933
KRH16155
KRH40615
KRH77471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	KRH77471	AT1G63000.1	21798944
AT1G78570.1	KRH04933	AT1G78570.1	21798944
AT1G78570.1	KRH16155	AT1G78570.1	21798944
AT1G78570.1	KRH00551	AT3G54220.1	19228333
AT1G78570.1	KRH40615	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04933	Soybean	cytosol, mitochondrion, plastid	93.74	95.34
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	80.15	79.91
Solyc08g069110.2.1	Tomato	unclear	78.17	78.65
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	77.71	77.83
KRH03995	Soybean	plastid	35.42	76.82
KRH27429	Soybean	cytosol, mitochondrion, plastid	78.02	76.38
KRH13001	Soybean	cytosol, mitochondrion, plastid	77.56	76.05
KRH21867	Soybean	cytosol, mitochondrion, plastid	77.4	75.78
KRH43408	Soybean	nucleus	77.25	75.75
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	76.95	75.34
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	76.95	75.22
CDY40003	Canola	cytosol, mitochondrion, plastid	76.79	75.07
CDX98494	Canola	cytosol, mitochondrion, plastid	73.89	74.92
CDX97601	Canola	cytosol, mitochondrion, plastid	73.89	74.92
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	76.03	74.89
CDY35137	Canola	cytosol, mitochondrion, plastid	76.49	74.78
KRH77471	Soybean	cytosol, endoplasmic reticulum	31.6	74.46
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	76.34	74.4
AT3G14790.2	Thale cress	mitochondrion	75.27	73.91
CDY24092	Canola	cytosol, mitochondrion, peroxisome	74.96	73.83
CDY45116	Canola	cytosol, mitochondrion, peroxisome	74.81	73.68
KRH57264	Soybean	endoplasmic reticulum	23.51	73.68
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	74.96	73.61
CDY20084	Canola	cytosol, mitochondrion, peroxisome	72.37	73.6
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	72.21	73.45
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	74.5	73.38
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	75.27	73.36
CDY32340	Canola	cytosol, mitochondrion, peroxisome	71.91	73.25
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	74.96	73.07
EER95086	Sorghum	cytosol, mitochondrion, plastid	74.96	73.07
TraesCS4A01G099200.1	Wheat	cytosol	75.27	73.04
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	74.35	72.9
CDY60210	Canola	cytosol, mitochondrion, peroxisome	74.35	72.9
Os03t0278200-01	Rice	nucleus, plasma membrane	74.66	72.44
TraesCS4D01G206000.1	Wheat	mitochondrion	75.42	72.43
Zm00001d028654_P002	Maize	cytosol	74.05	72.17
TraesCS4B01G205100.3	Wheat	mitochondrion	75.11	72.14
CDX88455	Canola	cytosol, peroxisome, plastid	77.25	71.57
CDY25850	Canola	cytosol, mitochondrion, peroxisome	45.5	69.63
HORVU4Hr1G059120.2	Barley	plastid	75.11	68.05
KRH57441	Soybean	cytosol	31.91	67.2
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	61.37	66.45
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	65.95	65.45
KRH46062	Soybean	cytosol	60.76	65.03
KRH41316	Soybean	extracellular, golgi	13.59	25.43
KRH60045	Soybean	extracellular	13.44	25.14
KRH51264	Soybean	plastid	12.98	24.22
KRH41129	Soybean	nucleus	12.52	23.43
KRH59827	Soybean	extracellular, golgi	12.52	23.43
KRH00406	Soybean	cytosol, mitochondrion, nucleus	2.44	23.19
KRG99450	Soybean	cytosol, mitochondrion, nucleus	2.44	23.19
KRH27832	Soybean	plastid	13.13	22.16
KRH77652	Soybean	plastid	13.13	21.99
KRH26241	Soybean	cytosol	1.68	20.75
KRH11871	Soybean	golgi, plastid	13.13	20.72
KRH36892	Soybean	golgi, mitochondrion	12.98	20.48
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	13.44	20.47
KRH59194	Soybean	golgi, mitochondrion	12.98	20.43
KRH43065	Soybean	golgi, mitochondrion, plastid	12.98	20.43
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	13.28	20.28
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	12.67	19.26
KRH02967	Soybean	nucleus	12.67	19.26
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	12.82	19.18
KRH58854	Soybean	endoplasmic reticulum, golgi	12.06	18.99
KRH76209	Soybean	endoplasmic reticulum, plastid	12.67	18.95
KRH40009	Soybean	plastid	11.76	18.92
KRG97348	Soybean	endoplasmic reticulum	12.21	18.22
KRH31569	Soybean	mitochondrion	12.21	17.32
KRH42756	Soybean	extracellular, golgi, plastid	12.06	16.02

Protein Annotations

EntrezGene:100776241	MapMan:3.13.6.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EMBL:ACUP02008794	InterPro:Epimerase_deHydtase
EnsemblPlantsGene:GLYMA_14G136400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	UniProt:I1M9T9
EnsemblPlants:KRH16155	ProteinID:KRH16155	ProteinID:KRH16155.1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370
PFAM:PF16363	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	SUPFAM:SSF51735	UniParc:UPI000233AB70	:

Description

hypothetical protein

Coordinates

chr14:+:24078410..24082978

Molecular Weight (calculated)

74743.3 Da

IEP (calculated)

6.376

GRAVY (calculated)

-0.370

Length

655 amino acids

Sequence
(BLAST)

001: MYEPKNILIT GAAGFIASHV TTRLIDSYPS YKIVALDKVD YCSTFKNLQS CASSPNFKFI KGDIATADIV NHILIEEEID TIMHFAAQTH VDNSFGNSME
101: FTYNNIYGTH VLLEACRVTN CVKRFIHVST DEVYGETDLE ADIGNHEASQ LLPTNPYSAT KAGAEMLVMA YHRSYGLPII TSRGNNVYGP NQYPEKLVPK
201: FILLAMKGEK LPIHGDGSNV RSYLHCEDVA EAFDVILHKG EIGQVYNIGT KKERSVLDVA EDICKLFKLN PKDVIEFVQD RPFNDKRYFL DDQKLKQLGW
301: EERTPWEEGL KMTIDWYIKN PDWWGDVSTA LNPHPRFSAI NLSDEAQWSF QYGYSRLARS YTEVGRKNSG LKFLIYGRTG WIGGLLGKLC EEERIDWEYG
401: RGRLEDRKSL MEDMRRVMPT HVLSAAGVTG RPNVDWCESH KVETIRTNVV GTLTLADVCK EHGLYMMNFA TGCIFEYDKE HPLGSGIGFK EEDKPNFIGS
501: FYSKTKAMVE DLLKNYDNVC TLRVRMPISS DLSNPRNFIT KISRYNKVVN IPNSMTVLDE LLPISIEMAK RNLKGIWNFT NPGVISHNQI LELFRDYIDP
601: KFKWENFDLG EQAKVIVAPR SNNEMDASKL KNEFPDLLSI RDSIIKFVFE PNKKT

Best Arabidopsis Sequence Match ( AT1G53500.1 )
(BLAST)

001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT

Arabidopsis Description

RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [extracellular,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.