CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27429	Soybean	cytosol, mitochondrion, plastid	98.36	98.36
KRH13001	Soybean	cytosol, mitochondrion, plastid	92.23	92.37
KRH43408	Soybean	nucleus	91.78	91.92
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	91.33	90.52
Solyc07g062130.2.1	Tomato	extracellular, unclear	87.0	86.35
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	86.25	85.61
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	84.9	85.16
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	84.75	85.01
GSMUA_Achr4P02550_001	Banana	mitochondrion	57.7	84.65
KRH57441	Soybean	cytosol	38.86	83.6
KXG21627	Sorghum	mitochondrion	82.21	80.17
Zm00001d037784_P002	Maize	endoplasmic reticulum	83.41	80.17
KRH03995	Soybean	plastid	35.87	79.47
KRH57264	Soybean	endoplasmic reticulum	24.51	78.47
HORVU5Hr1G007050.2	Barley	plastid	84.9	78.34
KRH16155	Soybean	cytosol	75.78	77.4
KRH77471	Soybean	cytosol, endoplasmic reticulum	31.99	76.98
KRH04933	Soybean	cytosol, mitochondrion, plastid	73.99	76.86
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	75.78	76.82
KRH46062	Soybean	cytosol	68.31	74.67
CDX81794	Canola	plastid	35.58	68.59
KRH41316	Soybean	extracellular, golgi	12.71	24.29
KRH51264	Soybean	plastid	12.71	24.22
KRH60045	Soybean	extracellular	12.56	24.0
KRH26241	Soybean	cytosol	1.79	22.64
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	14.35	22.33
KRH41129	Soybean	nucleus	11.66	22.29
KRH59827	Soybean	extracellular, golgi	11.66	22.29
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	14.2	22.14
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	14.2	22.04
KRH02967	Soybean	nucleus	14.2	22.04
KRH27832	Soybean	plastid	12.71	21.91
KRH58854	Soybean	endoplasmic reticulum, golgi	13.6	21.88
KRH77652	Soybean	plastid	12.71	21.74
KRH00406	Soybean	cytosol, mitochondrion, nucleus	2.24	21.74
KRG99450	Soybean	cytosol, mitochondrion, nucleus	2.24	21.74
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	14.05	21.46
KRH76209	Soybean	endoplasmic reticulum, plastid	13.75	21.0
KRH11871	Soybean	golgi, plastid	13.0	20.96
KRH40009	Soybean	plastid	12.71	20.88
KRH36892	Soybean	golgi, mitochondrion	12.86	20.72
KRH43065	Soybean	golgi, mitochondrion, plastid	12.71	20.43
KRG97348	Soybean	endoplasmic reticulum	13.15	20.05
KRH59194	Soybean	golgi, mitochondrion	12.41	19.95
KRH31569	Soybean	mitochondrion	13.3	19.26
KRH42756	Soybean	extracellular, golgi, plastid	13.3	18.05

Protein Annotations

EMBL:ACUP02008366	EnsemblPlants:KRH21867	EnsemblPlantsGene:GLYMA_13G264500	EntrezGene:100789909	Gene3D:3.40.50.720	Gene3D:3.90.25.10
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321
PFAM:PF16363	ProteinID:KRH21867	ProteinID:KRH21867.1	SUPFAM:SSF51735	UniParc:UPI000233B68E	UniProt:I1M2V7
MapMan:3.13.6.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:36755174..36759150

Molecular Weight (calculated)

75504.4 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.360

Length

669 amino acids

Sequence
(BLAST)

001: MATHTPKNIL ITGAAGFIAS HVANRLIRNY PQYKIVVLDK LDYCSNLKNL IPSKSSPNFK FVKGDIGSAD LVNYLLITES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIKRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMQG KPLPIHGDGS NVRSYLYCED VAEAFELILH KGEVGHVYNI GTKKERRVID VAKDMCRLFK MDPETSIKFV ENRPFNDQRY FLDDEKLKIL
301: GWSERTTWEE GLKKTMDWYI NNPDWWGDVS GALLPHPRML MMPGGLERHF DGSDEEKPAS YVSTNTRMVV PTSKNVNSSQ KPALKFLIYG RTGWIGGLLG
401: KLCEKQGIPY EYGKGRLEDR SSLVADIQNV KPTHIFNAAG VTGRPNVDWC ESHKTETIRT NVAGTLTLAD VSREHGLLMI NYATGCIFEY DAAHPEGSGI
501: GFKEEDRPNF FGSFYSKTKA MVEELLKEYD NVCTLRVRMP ISSDLSNPRN FITKISRYNK VVNIPNSMTI LDELLPISIE MAKRNLRGIW NFTNPGAVSH
601: NEILEMYRDY IDPSFKWANF NLEEQAKVII AARSNNEMDA SKLKNEFPEL LSIKESLIKY VFEPNKKTA

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.