Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G032700.1 | Wheat | cytosol, mitochondrion, plastid | 91.17 | 99.1 |
| TraesCS5B01G023700.1 | Wheat | cytosol, mitochondrion, plastid | 91.03 | 98.95 |
| KXG21627 | Sorghum | mitochondrion | 82.34 | 87.03 |
| Zm00001d037784_P002 | Maize | endoplasmic reticulum | 82.9 | 86.35 |
| KRH27429 | Soybean | cytosol, mitochondrion, plastid | 78.34 | 84.9 |
| KRH21867 | Soybean | cytosol, mitochondrion, plastid | 78.34 | 84.9 |
| VIT_19s0014g00290.t01 | Wine grape | cytosol, mitochondrion, plastid | 78.9 | 84.74 |
| KRH13001 | Soybean | cytosol, mitochondrion, plastid | 77.93 | 84.58 |
| KRH43408 | Soybean | nucleus | 77.38 | 83.98 |
| GSMUA_Achr4P02550_001 | Banana | mitochondrion | 52.69 | 83.77 |
| Solyc07g062130.2.1 | Tomato | extracellular, unclear | 77.24 | 83.09 |
| PGSC0003DMT400018192 | Potato | cytosol, mitochondrion, plastid | 76.14 | 81.9 |
| HORVU4Hr1G059120.2 | Barley | plastid | 77.1 | 77.32 |
| KRG98907 | Soybean | cytosol, mitochondrion, peroxisome | 68.55 | 75.3 |
| KRH46062 | Soybean | cytosol | 61.93 | 73.37 |
| HORVU6Hr1G065690.1 | Barley | peroxisome, plastid | 32.14 | 73.04 |
| CDX81794 | Canola | plastid | 31.45 | 65.71 |
| HORVU5Hr1G060660.3 | Barley | mitochondrion | 12.55 | 23.16 |
| HORVU5Hr1G055920.8 | Barley | plastid | 11.59 | 22.46 |
| HORVU5Hr1G077110.3 | Barley | mitochondrion | 12.14 | 20.9 |
| HORVU7Hr1G074300.2 | Barley | golgi | 11.59 | 20.74 |
| HORVU7Hr1G031270.1 | Barley | endoplasmic reticulum | 12.55 | 20.54 |
| HORVU2Hr1G104110.1 | Barley | mitochondrion, plastid | 11.45 | 20.15 |
| HORVU5Hr1G080860.10 | Barley | mitochondrion | 11.72 | 20.05 |
| HORVU7Hr1G053260.2 | Barley | plastid | 12.28 | 18.16 |
| HORVU4Hr1G063010.1 | Barley | peroxisome | 12.41 | 17.51 |
| HORVU1Hr1G095430.8 | Barley | cytosol, nucleus | 9.1 | 17.51 |
| HORVU5Hr1G075660.1 | Barley | plastid | 12.14 | 17.32 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G007050.2 | EnsemblPlantsGene:HORVU5Hr1G007050 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf |
| InterPro:RmlD-like-bd | PANTHER:PTHR43000 | PANTHER:PTHR43000:SF15 | PFAM:PF04321 | PFAM:PF16363 | SEG:seg |
| SUPFAM:SSF51735 | UniParc:UPI000B488B70 | UniProt:A0A287Q976 | MapMan:3.13.6.1 | : | : |
Description
No Description!
Coordinates
chrchr5H:-:13032905..13036870
Molecular Weight (calculated)
81322.2 Da
IEP (calculated)
7.392
GRAVY (calculated)
-0.357
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: RTHTDTATAT TTTTAAISPF IDGKPPPRSP PSTDATAPPP PPPLRRVLPT GFQKLQSDMA TPYTPKSILI TGAAGFIASH VTNRIVRNYP DYKIVVLDKL
101: DYCSNLKNLL PASSSPNFKF VKGDIASADL VNFLLVTENI DTIMHFAAQT HVDNSFGNSF EFTKNNIYGT HVLLEACKVT GQIRRFIHVS TDEVYGETDE
201: DAVVGNHEAS QLLPTNPYSA TKAGAEMLVM AYGRSYGLPV ITTRGNNVYG PNQFPEKLIP KFILLAMRGK PLPIHGDGSN VRSYLYCEDV AEAFEVILHR
301: GEVGHVYNIG TKRERTVTDV AKDVCRLFNL EADKVIQFVD NRPFNDQRYF LDDEKLKSLG WSERTRWEEG LRKTMEWYVA NSDYWGDVSG ALLPHPRTLM
401: MPGCEGSEEI KGMLNLFTNN QTKMVAPTSE GSSQTRSLKF LIYGRTGWIG GLLGKICEKQ GIPYEYGKGR LEERFSIVLD IQTVKPTHVF NAAGVTGRPN
501: VDWCESHKPD TIRTNVVGTL TLADVCREHG LLVINYATGC IFEYDANHPE GSGIGFKEEN KPNFTGSFYS KTKAMVEELL KEYENVCTLR VRMPISSDLN
601: NPRNFITKIS RYDKVVNIPN SMTVLDELLP ISVEMAKRNL RGIWNFTNPG VVSHNEILEM YKKYMDPSYK WTNFTLEEQA KVIVAPRSNN EMDAAKLKRE
701: FPELLSIKDS LIKYVFEPNR KVPAT
101: DYCSNLKNLL PASSSPNFKF VKGDIASADL VNFLLVTENI DTIMHFAAQT HVDNSFGNSF EFTKNNIYGT HVLLEACKVT GQIRRFIHVS TDEVYGETDE
201: DAVVGNHEAS QLLPTNPYSA TKAGAEMLVM AYGRSYGLPV ITTRGNNVYG PNQFPEKLIP KFILLAMRGK PLPIHGDGSN VRSYLYCEDV AEAFEVILHR
301: GEVGHVYNIG TKRERTVTDV AKDVCRLFNL EADKVIQFVD NRPFNDQRYF LDDEKLKSLG WSERTRWEEG LRKTMEWYVA NSDYWGDVSG ALLPHPRTLM
401: MPGCEGSEEI KGMLNLFTNN QTKMVAPTSE GSSQTRSLKF LIYGRTGWIG GLLGKICEKQ GIPYEYGKGR LEERFSIVLD IQTVKPTHVF NAAGVTGRPN
501: VDWCESHKPD TIRTNVVGTL TLADVCREHG LLVINYATGC IFEYDANHPE GSGIGFKEEN KPNFTGSFYS KTKAMVEELL KEYENVCTLR VRMPISSDLN
601: NPRNFITKIS RYDKVVNIPN SMTVLDELLP ISVEMAKRNL RGIWNFTNPG VVSHNEILEM YKKYMDPSYK WTNFTLEEQA KVIVAPRSNN EMDAAKLKRE
701: FPELLSIKDS LIKYVFEPNR KVPAT
001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
Arabidopsis Description
RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [peroxisome,extracellular,cytosol]
SUBAcon: [peroxisome,extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.