Factsheet for VIT_19s0014g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21867	Soybean	cytosol, mitochondrion, plastid	90.52	91.33
KRH27429	Soybean	cytosol, mitochondrion, plastid	89.93	90.73
KRH13001	Soybean	cytosol, mitochondrion, plastid	88.74	89.67
KRH43408	Soybean	nucleus	88.3	89.22
Solyc07g062130.2.1	Tomato	extracellular, unclear	87.56	87.69
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	86.22	86.35
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	84.89	85.91
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	84.59	85.61
GSMUA_Achr4P02550_001	Banana	mitochondrion	57.78	85.53
VIT_02s0025g04610.t01	Wine grape	cytosol	36.59	81.79
KXG21627	Sorghum	mitochondrion	82.22	80.9
Zm00001d037784_P002	Maize	endoplasmic reticulum	82.37	79.89
HORVU5Hr1G007050.2	Barley	plastid	84.74	78.9
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	76.74	78.84
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	75.85	77.58
KRH46062	Soybean	cytosol	68.15	75.16
CDX81794	Canola	plastid	35.26	68.59
VIT_02s0025g01560.t01	Wine grape	golgi	13.33	25.86
VIT_02s0025g01580.t01	Wine grape	golgi	13.19	25.57
VIT_02s0025g04210.t01	Wine grape	cytosol	12.0	23.14
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	8.0	22.88
VIT_16s0022g01450.t01	Wine grape	mitochondrion	13.78	22.79
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	14.52	22.63
VIT_15s0048g00330.t01	Wine grape	plastid	14.07	22.25
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	12.44	21.65
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	13.93	21.61
VIT_03s0017g00980.t01	Wine grape	golgi	13.19	21.34
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	14.22	21.29
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	14.22	20.65
VIT_10s0003g05640.t01	Wine grape	golgi	12.59	20.33

Protein Annotations

EntrezGene:100260586	wikigene:100260586	MapMan:3.13.6.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EMBL:AM476587
ProteinID:CAN79484	ProteinID:CAN79484.1	ProteinID:CCB46191	ProteinID:CCB46191.1	UniProt:F6H2K4	EMBL:FN595229
EntrezGene:LOC100260586	wikigene:LOC100260586	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF04321	PFAM:PF16363
PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	InterPro:RmlD-like-bd	SUPFAM:SSF51735	TIGR:TC53811	UniParc:UPI00015C7A87
ArrayExpress:VIT_19s0014g00290	EnsemblPlantsGene:VIT_19s0014g00290	EnsemblPlants:VIT_19s0014g00290.t01	unigene:Vvi.1421	RefSeq:XP_002285634	RefSeq:XP_002285634.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:288656..291143

Molecular Weight (calculated)

75750.7 Da

IEP (calculated)

7.105

GRAVY (calculated)

-0.307

Length

675 amino acids

Sequence
(BLAST)

001: MATHTPKNIL ITGAAGFIAS HVANRLIRNY PDYKIVVLDK LDYCSNLKNL LPSKSSPNFK FVKGDIGSAD LVNFLLITES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG KPLPIHGDGS NVRSYLYCED VAEAFEVILH RGEVGHVYNI GTKKERRVID VAKDVCNLFS MDPETSIKFV ENRPFNDQRY FLDDQKLKIL
301: GWSERTTWQE GLKKTMEWYI NNPNWWGDVS GALLPHPRML MMPGGIERHF DGSEDSDSTA SPVSSNLNQT RMVVPVPKSV SSPRKPSLKF LLYGRTGWIG
401: GLLGKLCEKQ GIPYEYGRGR LEDRASLLAD IQNVKPTHVF NAAGVTGRPN VDWCESHKPE TIRANVAGTL TLADVCREHG LLMMNFATGC IFEYDAAHPE
501: GSGIGFKEED TPNFAGSFYS KTKAMVEELL KEFDNVCTLR VRMPISSDLN NPRNFITKIS RYNKVVNIPN SMTVLDELLP ISIEMAKRNC RGIWNFTNPG
601: VVSHNEILEM YKSYIDPNFK WANFTLEEQA KVIVAARSNN EMDASKLKNE FPELLPIKDS LIKYVFEPNQ KSLAA

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.