Factsheet for VIT_10s0003g05640.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
golgi 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g00980.t01	Wine grape	golgi	82.3	82.49
Os07t0139400-01	Rice	plasma membrane	81.82	81.24
GSMUA_Achr4P31860_001	Banana	mitochondrion	79.9	80.29
HORVU5Hr1G077110.3	Barley	mitochondrion	79.9	79.33
TraesCS5A01G291300.1	Wheat	golgi	79.43	78.86
TraesCS5D01G298700.1	Wheat	mitochondrion	79.19	78.62
TraesCS5B01G290300.1	Wheat	mitochondrion	78.95	78.38
EER95854	Sorghum	mitochondrion, plastid	80.14	77.91
VIT_02s0025g01580.t01	Wine grape	golgi	35.65	42.82
VIT_02s0025g01560.t01	Wine grape	golgi	35.41	42.53
VIT_02s0025g04210.t01	Wine grape	cytosol	31.82	38.0
VIT_15s0048g00330.t01	Wine grape	plastid	22.01	21.55
VIT_16s0022g01450.t01	Wine grape	mitochondrion	20.81	21.32
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	19.62	21.13
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	22.49	20.84
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	21.53	20.79
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	21.05	20.23
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	10.77	19.07
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	21.05	18.92
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	21.05	13.39
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	20.33	12.59
VIT_02s0025g04610.t01	Wine grape	cytosol	3.11	4.3

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	EntrezGene:100259390	wikigene:100259390	MapMan:3.13.7.1	Gene3D:3.40.50.720
Gene3D:3.90.25.10	ProteinID:CBI31081	ProteinID:CBI31081.3	UniProt:D7TKQ9	EMBL:FN595992	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
GO:GO:0016853	EntrezGene:LOC100259390	wikigene:LOC100259390	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363
PANTHER:PTHR43349	PANTHER:PTHR43349:SF14	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	InterPro:UDP_G4E	UniParc:UPI00015CAF7F
ArrayExpress:VIT_10s0003g05640	EnsemblPlantsGene:VIT_10s0003g05640	EnsemblPlants:VIT_10s0003g05640.t01	unigene:Vvi.16702	RefSeq:XP_002270765	RefSeq:XP_002270765.1
RefSeq:XP_010655777.1	RefSeq:XP_010655778.1	RefSeq:XP_010655779.1	RefSeq:XP_019078317.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:10483749..10493329

Molecular Weight (calculated)

45829.0 Da

IEP (calculated)

9.128

GRAVY (calculated)

-0.268

Length

418 amino acids

Sequence
(BLAST)

001: MLNFTRSRNQ PRPSRSMPFG GMEYADPKRK SNVVGKILLA ATLTALCILM LKQSSNFNTP SPFSRHEPGV THVLVTGGAG YIGSHAALRL LKDSHRVTIV
101: DNLSRGNLGA IKVLQEQFPE PGRLQFIYAD LGDAKAVNKI FSENAFDAVM HFAAVAYVGE STLEPLRYYH NITSNTLVVL EAMAAHGVNT LIYSSTCATY
201: GEPEKMPITE QTPQVPINPY GKAKKMAEDI ILDFSKNSEM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ASGVIPGLKV KGTDYKTPDG
301: TCVRDYIDVT DLVDAHVKAL NKAAPGKVGI YNVGTGKGRS VKEFVEACKK ATGVNIKVEY LARRPGDYAE VFSDPSKIDH ELNWTAKYTD LQESLRVAWR
401: WQKAHRNGYG TTPLAMAS

Best Arabidopsis Sequence Match ( AT1G30620.2 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.