Factsheet for VIT_15s0048g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
cytosol 1
endoplasmic reticulum 3
golgi 3
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g00330.t01	Wine grape	plastid	94.69	96.02
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	94.23	87.74
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	86.84	87.24
Solyc01g091200.2.1	Tomato	nucleus	87.07	86.67
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	86.14	85.75
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	86.61	85.62
KRH76209	Soybean	endoplasmic reticulum, plastid	86.61	85.62
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	85.91	85.52
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	84.53	84.14
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	84.3	83.91
CDX95646	Canola	cytosol, endoplasmic reticulum, golgi, plastid	84.06	83.68
AT2G45310.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	84.3	83.52
CDY67756	Canola	cytosol, endoplasmic reticulum, golgi, plastid	83.83	83.45
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	83.6	83.22
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	70.44	78.61
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	78.52	78.16
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	42.26	77.54
Solyc03g083550.1.1	Tomato	golgi	70.44	75.12
PGSC0003DMT400059216	Potato	cytosol	25.64	74.0
VIT_16s0022g01450.t01	Wine grape	mitochondrion	68.36	72.55
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	66.28	63.64
VIT_02s0025g04210.t01	Wine grape	cytosol	21.25	26.29
VIT_02s0025g01580.t01	Wine grape	golgi	20.55	25.57
VIT_02s0025g01560.t01	Wine grape	golgi	20.09	25.0
VIT_10s0003g05640.t01	Wine grape	golgi	20.79	21.53
VIT_03s0017g00980.t01	Wine grape	golgi	19.86	20.62
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	22.17	14.61
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	22.63	14.52
VIT_02s0025g04610.t01	Wine grape	cytosol	3.23	4.64

Protein Annotations

EntrezGene:100247175	wikigene:100247175	MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EMBL:AM481361
ProteinID:CAN73016	ProteinID:CAN73016.1	ProteinID:CCB61417	ProteinID:CCB61417.1	InterPro:Epimerase_deHydtase	UniProt:F6I399
EMBL:FN596739	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016857	GO:GO:0050662
EntrezGene:LOC100247175	wikigene:LOC100247175	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713
PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	TIGR:TC55112	TIGR:TC63475	TMHMM:TMhelix
UniParc:UPI0001984DB2	ArrayExpress:VIT_15s0048g00340	EnsemblPlantsGene:VIT_15s0048g00340	EnsemblPlants:VIT_15s0048g00340.t01	unigene:Vvi.12979	unigene:Vvi.169
unigene:Vvi.17552	RefSeq:XP_002280967	RefSeq:XP_002280967.1	RefSeq:XP_002281007	RefSeq:XP_002281007.1	RefSeq:XP_019081321.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:-:14473570..14475636

Molecular Weight (calculated)

48190.0 Da

IEP (calculated)

10.457

GRAVY (calculated)

-0.222

Length

433 amino acids

Sequence
(BLAST)

001: MSQLKQMSHL DNIPSTPGKF KMEKRLRWHS SLAKLTFWSF VFLGLIFIFF FLSPSSSSLP SDPSRRSLRT YSWGGPAWEK RVRSSAKVRA RNGISVLVTG
101: AAGFVGTHVS AALKRRGDGV VGLDNFNDYY DPSLKRARQA LLERTGVFIV EGDINDSELL RKLFEVVAFT HVMHLAAQAG VRYAMENPSS YVHSNIAGLV
201: NLLEVCKSAN PQPAIVWASS SSVYGLNTKV PFSERDRTDQ PASLYAATKK AGEEIAHTYN HIYGLSLTGL RFFTVYGPWG RPDMAYFFFT KDILKGKSIR
301: IFEAPNHGTV ARDFTYIDDI VKGCVAALDT AEKSTGSGGK KKGPAQLRVF NLGNTSPVPV TDLVSILERL LKVKAKRTMM KMPRNGDVQF THANISLAQR
401: ELGYKPTTDL QTGLKKFVRW YIKYYSAGEK SAQ

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.