Factsheet for VIT_15s0048g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
endoplasmic reticulum 1
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	96.02	94.69
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	94.85	87.1
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	87.12	86.31
Solyc01g091200.2.1	Tomato	nucleus	86.89	85.29
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	85.95	84.37
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	85.71	84.14
KRH76209	Soybean	endoplasmic reticulum, plastid	85.48	83.33
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	84.78	83.22
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	84.54	82.99
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	84.78	82.65
CDX95646	Canola	cytosol, endoplasmic reticulum, golgi, plastid	83.84	82.3
AT2G45310.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	84.07	82.15
CDY67756	Canola	cytosol, endoplasmic reticulum, golgi, plastid	83.61	82.07
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	83.37	81.84
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	70.26	77.32
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	42.62	77.12
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	78.22	76.78
Solyc03g083550.1.1	Tomato	golgi	70.96	74.63
PGSC0003DMT400059216	Potato	cytosol	25.53	72.67
VIT_16s0022g01450.t01	Wine grape	mitochondrion	68.85	72.06
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	66.98	63.41
VIT_02s0025g04210.t01	Wine grape	cytosol	21.78	26.57
VIT_02s0025g01580.t01	Wine grape	golgi	20.61	25.29
VIT_02s0025g01560.t01	Wine grape	golgi	20.14	24.71
VIT_10s0003g05640.t01	Wine grape	golgi	21.55	22.01
VIT_03s0017g00980.t01	Wine grape	golgi	20.61	21.1
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	21.78	14.16
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	22.25	14.07
VIT_02s0025g04610.t01	Wine grape	cytosol	3.28	4.64

Protein Annotations

EntrezGene:100242036	wikigene:100242036	MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EMBL:AM481361
ProteinID:CAN73017	ProteinID:CAN73017.1	ProteinID:CCB61418	ProteinID:CCB61418.1	InterPro:Epimerase_deHydtase	UniProt:F6I3A0
EMBL:FN596739	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016857	GO:GO:0050662
EntrezGene:LOC100242036	wikigene:LOC100242036	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713
PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0001984DB3	ArrayExpress:VIT_15s0048g00330
EnsemblPlantsGene:VIT_15s0048g00330	EnsemblPlants:VIT_15s0048g00330.t01	RefSeq:XP_002280994	RefSeq:XP_002280994.2	RefSeq:XP_010661665.1	SEG:seg

Description

No Description!

Coordinates

chr15:-:14467820..14469235

Molecular Weight (calculated)

47480.2 Da

IEP (calculated)

10.514

GRAVY (calculated)

-0.221

Length

427 amino acids

Sequence
(BLAST)

001: MSHLDNIPST PGKFKMEKRL RWHSSLAKLT FWSFVFSGLI FIVLFLSPSS SSLPSDPTRR SLRTHSWGGP AWEKRVRSSA KVRARNGISV LVTGAAGFVG
101: THVSAALKRR GDGVIGLDNF NDYYDPSLKR ARQALLERTG VFIVEGDIND SKLLKKLFEV VAFTHVMHLA AQAGVRYAME NPSSYVHSNI AGLVNLLEVC
201: KSANPQPAIV WASSSSVYGL NTKVPFSERD RTDQPASLYA ATKKAGEEIA HTYNHIYGLS LTGLRFFTVY GPWGRPDMAY FFFTRDILKE KSIPIFEAPN
301: RGTVARDFTY IDDIVKGCVA ALDTAEKSTG SGGKKKGPAQ LRIFNLGNTS PVPVTDLVSI LERLLKVKAK RKMIKMPRNG DVQFTHANIS LAQRELGYKP
401: TTDLQTGLKK FVRWYLKYYS AGEKSAW

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.