Factsheet for Solyc10g018260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plastid

Predictor Summary:

plastid 2
cytosol 1
endoplasmic reticulum 1
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	95.4	95.4
Solyc01g091200.2.1	Tomato	nucleus	89.43	89.43
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	87.13	87.13
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	85.52	85.91
VIT_15s0048g00330.t01	Wine grape	plastid	84.14	85.71
AT4G00110.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	83.45	84.42
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	82.53	83.49
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	82.53	83.49
KRH76209	Soybean	endoplasmic reticulum, plastid	82.99	82.42
AT1G02000.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	82.07	82.26
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	82.3	81.74
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	84.37	78.92
Solyc03g083550.1.1	Tomato	golgi	69.2	74.14
Solyc08g079440.1.1	Tomato	nucleus	73.1	71.46
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	67.82	68.29
Solyc07g006220.1.1	Tomato	nucleus	64.83	66.35
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	63.68	63.97
Solyc09g092330.1.1	Tomato	nucleus	65.98	63.5
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	20.69	25.86
Solyc08g080570.2.1	Tomato	cytosol	20.69	25.64
Solyc08g082440.2.1	Tomato	cytosol, golgi	19.77	24.5
Solyc12g006410.1.1	Tomato	unclear	19.54	21.3
Solyc07g043550.2.1	Tomato	cytosol, unclear	14.71	21.19
Solyc02g030230.2.1	Tomato	mitochondrion	20.0	20.91
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	20.0	20.86
Solyc08g069110.2.1	Tomato	unclear	20.69	13.82
Solyc07g062130.2.1	Tomato	extracellular, unclear	21.15	13.65
Solyc10g007480.2.1	Tomato	nucleus	16.09	11.86
Solyc08g080140.2.1	Tomato	extracellular	3.45	4.98

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016857	GO:GO:0050662	UniProt:K4CYV0	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim
PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc10g018260.1
EnsemblPlants:Solyc10g018260.1.1	TMHMM:TMhelix	UniParc:UPI000276C77D	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:7314790..7316097

Molecular Weight (calculated)

47986.4 Da

IEP (calculated)

10.170

GRAVY (calculated)

-0.207

Length

435 amino acids

Sequence
(BLAST)

001: MSSMKHVDNI PSTPGKFKEK SHYNRLRLHF SVAKLTFWSF VFLGLIFICF FKSTSSSSSP VSSDLSRRSL RTSSYDGPAW EKRIKASAKI RSTNGISVLV
101: TGAAGFVGTH VSSALKRRGD GVVGLDNFND YYDPSLKRAR QTLLESAGVY IVEGDINDVA LLKKLFDIVQ FSHVMHLAAQ AGVRYAMENP SSYVHSNIAG
201: LVNLLEFCKN ANPQPAIVWA SSSSVYGLNT KVPFSESDRT DQPASLYAAT KKAGEEIAHT YNHIYGLSLT GLRFFTVYGP WGRPDMAYFF FTRDMLKGKS
301: ISIFEGADHG TVARDFTYID DIVKGCLGAL DTAEKSTGSG GKKKGPAQLR VFNLGNTSPV PVSDLVTILE RLLKVKAKRA VMKLPRNGDV QFTHANISLA
401: QRELGYKPTT DLQTGLKKFV RWYLSYYGEG KKSAQ

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.