Factsheet for Solyc12g010540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 1
endoplasmic reticulum 3
golgi 3
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020223	Potato	endoplasmic reticulum	97.22	97.45
Solyc07g006220.1.1	Tomato	nucleus	83.33	84.71
KRH02967	Soybean	nucleus	82.64	82.83
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	82.18	82.37
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	80.79	81.35
CDY70926	Canola	cytosol, endoplasmic reticulum, golgi, plastid	80.79	81.35
CDY28188	Canola	cytosol, endoplasmic reticulum, golgi, plastid	80.79	81.35
AT4G30440.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	80.56	81.12
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	80.09	80.47
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	80.09	80.47
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	79.63	80.0
Os02t0791500-01	Rice	endoplasmic reticulum, golgi, plastid	79.63	78.72
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	79.17	77.9
TraesCS6A01G353200.1	Wheat	plastid	78.7	77.63
TraesCS6D01G335600.1	Wheat	plastid	78.7	77.63
TraesCS6B01G385900.1	Wheat	plastid	78.7	77.63
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	72.22	77.23
Zm00001d018350_P001	Maize	plasma membrane	78.47	77.22
HORVU5Hr1G060660.3	Barley	mitochondrion	69.21	76.08
Os06t0187200-01	Rice	golgi, peroxisome	54.4	76.05
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	72.69	75.66
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	71.99	75.12
Zm00001d045078_P001	Maize	extracellular, golgi	71.3	74.58
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	69.68	74.32
OQU75981	Sorghum	endoplasmic reticulum	75.46	74.09
TraesCS7D01G154100.1	Wheat	golgi	73.61	73.44
Zm00001d037087_P001	Maize	endoplasmic reticulum	74.54	73.18
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	75.0	73.14
TraesCS7B01G056200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	74.54	72.69
Solyc03g083550.1.1	Tomato	golgi	64.35	68.47
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	68.29	67.82
Solyc01g091200.2.1	Tomato	nucleus	66.67	66.21
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	66.2	65.75
Solyc08g079440.1.1	Tomato	nucleus	64.81	62.92
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	62.04	61.89
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	53.94	60.52
Solyc09g092330.1.1	Tomato	nucleus	62.73	59.96
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	69.21	58.51
Solyc08g080570.2.1	Tomato	cytosol	22.22	27.35
Solyc08g082440.2.1	Tomato	cytosol, golgi	21.53	26.5
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	21.06	26.15
Solyc02g030230.2.1	Tomato	mitochondrion	21.53	22.36
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	21.53	22.3
Solyc12g006410.1.1	Tomato	unclear	19.91	21.55
Solyc07g043550.2.1	Tomato	cytosol, unclear	14.35	20.53
Solyc08g069110.2.1	Tomato	unclear	19.68	13.06
Solyc07g062130.2.1	Tomato	extracellular, unclear	19.91	12.76
Solyc10g007480.2.1	Tomato	nucleus	15.51	11.36
Solyc08g080140.2.1	Tomato	extracellular	3.01	4.32

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016857
UniProt:K4DCE1	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF16363	PRINTS:PR01713
PANTHER:PTHR43574	PANTHER:PTHR43574:SF17	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc12g010540.1	EnsemblPlants:Solyc12g010540.1.1	TMHMM:TMhelix
UniParc:UPI0002769E66	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:3531522..3532820

Molecular Weight (calculated)

48194.8 Da

IEP (calculated)

9.957

GRAVY (calculated)

-0.229

Length

432 amino acids

Sequence
(BLAST)

001: MRGLEEEFIP STPGKFKDKT YYSGNRQFHR CFASTSTMFL WALFLLALTA SYLSFQSFIN SGTRYLSSTW GSLHWEKQVR DSAQIHRVNG MSVLVTGAAG
101: FVGSHVSIAL KKRGDGVVGI DNFNNYYDPS LKKARKDLLN LQNVYLIEGD INDVHLISKL FDIVAFTHVM HLAAQAGVRY AMENPKSYVH SNIAGLVTLL
201: EACKNANPQP AIVWASSSSV YGLNEKVPFS ESDRTDQPAS LYAATKKAGE EITHTYNHIY GLSITGLRFF TVYGPWGRPD MAYFSFTRNI LRGKPITVYR
301: GKNRVDLARD FTYIDDIVKG CVGSLDTAGK STGSGGKKRG PAMFRIFNLG NTSPVTVPMM VAMLEKHLKV KAKKHVLDMP GNGDVPFTHA NISLAQKELG
401: YKPTTNLQTG LGKFVRWYLS YYGYNQEKFI KD

Best Arabidopsis Sequence Match ( AT4G30440.1 )
(BLAST)

001: MPSIEDELFP STPGKFKIDR SNRQLHRCFA STSTMFLWAL FLIALTASYL SFQSFVDSGS RYLTASWGGI QWEKQVRTSA QIHRSGGISV LVTGATGFVG
101: SHVSLALRKR GDGVVGLDNF NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE NPQSYVHSNI AGLVNLLEIC
201: KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN
301: RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP
401: TTDLETGLKK FVRWYLSYYG YNTKAKLVH

Arabidopsis Description

GAE1GAE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXF7]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.