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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, golgi

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • peroxisome 2
  • golgi 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, peroxisome
Any Predictor:cytosol, golgi, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:peroxisome
Plant-mPloc:golgi, plastid
PProwler:mitochondrion
PTS1:peroxisome
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d045078_P001 Maize extracellular, golgi 87.38 65.38
TraesCS7D01G154100.1 Wheat golgi 89.97 64.2
Zm00001d037087_P001 Maize endoplasmic reticulum 90.29 63.41
OQU75981 Sorghum endoplasmic reticulum 89.97 63.18
TraesCS7B01G056200.1 Wheat endoplasmic reticulum, golgi, peroxisome 89.64 62.53
TraesCS7A01G152300.1 Wheat endoplasmic reticulum 89.64 62.53
HORVU7Hr1G031270.1 Barley endoplasmic reticulum 89.64 62.53
Os02t0791500-01 Rice endoplasmic reticulum, golgi, plastid 83.17 58.81
KRH72376 Soybean endoplasmic reticulum, mitochondrion 78.96 56.61
AT4G30440.1 Thale cress cytosol, endoplasmic reticulum, golgi, plastid 78.32 56.41
KRH02967 Soybean nucleus 78.32 56.15
Bra011194.1-P Field mustard cytosol, endoplasmic reticulum, golgi, plastid 77.67 55.94
CDY28188 Canola cytosol, endoplasmic reticulum, golgi, plastid 77.67 55.94
CDY70926 Canola cytosol, endoplasmic reticulum, golgi, plastid 77.67 55.94
CDX72242 Canola cytosol, endoplasmic reticulum, golgi, plastid 77.67 55.81
CDY39205 Canola cytosol, endoplasmic reticulum, golgi, plastid 77.67 55.81
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, golgi 73.14 55.8
PGSC0003DMT400020223 Potato endoplasmic reticulum 77.35 55.45
Solyc07g006220.1.1 Tomato nucleus 76.05 55.29
GSMUA_Achr4P02040_001 Banana endoplasmic reticulum 72.17 55.2
Bra024075.1-P Field mustard cytosol, endoplasmic reticulum, golgi, plastid 76.7 55.12
PGSC0003DMT400029181 Potato cytosol, golgi, peroxisome 75.73 55.06
GSMUA_Achr3P04850_001 Banana endoplasmic reticulum 73.46 54.83
GSMUA_Achr9P13500_001 Banana cytosol, endoplasmic reticulum, golgi, plastid 73.46 54.7
Solyc12g010540.1.1 Tomato endoplasmic reticulum 76.05 54.4
Os03t0249500-01 Rice plastid 69.9 44.63
GSMUA_Achr7P16250_001 Banana cytosol, endoplasmic reticulum, golgi 72.17 43.64
Os08t0526100-01 Rice plastid 66.67 43.1
Os09t0504000-01 Rice cytosol, endoplasmic reticulum, golgi 67.31 41.77
GSMUA_Achr11P... Banana endoplasmic reticulum, golgi, nucleus 51.78 41.56
Os05t0595100-01 Rice plastid 23.3 20.34
Os09t0323000-01 Rice cytosol 23.3 19.51
Os09t0526700-01 Rice cytosol 23.3 19.3
Os08t0374800-01 Rice golgi 24.27 18.38
Os04t0618200-02 Rice golgi 21.04 16.62
Os08t0129700-01 Rice mitochondrion 20.06 15.27
Os07t0139400-01 Rice plasma membrane 19.42 14.25
Os03t0278200-01 Rice nucleus, plasma membrane 22.98 10.52
Os05t0203400-00 Rice plastid 8.74 8.08
Os02t0678400-01 Rice plasma membrane 4.53 4.5
Os03t0249400-01 Rice nucleus, plasma membrane 0.65 1.57
Protein Annotations
MapMan:3.13.4.1Gene3D:3.40.50.720Gene3D:3.90.25.10ProteinID:BAF18929.1ProteinID:BAS96529.1GO:GO:0003674
GO:GO:0003824GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016857InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sfInterPro:Nuc_sugar_epimEnsemblPlantsGene:Os06g0187200EnsemblPlants:Os06t0187200-01PFAM:PF16363PRINTS:PR01713
PANTHER:PTHR43574PANTHER:PTHR43574:SF17UniProt:Q0DDZ4SUPFAM:SSF51735UniParc:UPI0000E126DCSEG:seg
Description
UDP-glucuronic acid 4-epimerase 5Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6). (Os06t0187200-01)
Coordinates
chr6:-:4404127..4405602
Molecular Weight (calculated)
34101.9 Da
IEP (calculated)
9.982
GRAVY (calculated)
-0.151
Length
309 amino acids
Sequence
(BLAST)
001: YDPSLKKARR ALLGSHGVFV VDGDINDGRL LAKLFDVVPF THVLHLAAQA GVRYAMENPS SYVRSNVAGL VSLLESCKDA DPQPAVVWAS SSSVYGLNDA
101: VPFSEAHRTD KPASLYAATK KAGEAITHTY NHIYGLSITG LRFFTVYGPW GRPDMAYFFF TRNILQGKPV TVYRGRDHVD IARDFTYIDD IVRGCLAALD
201: TAGRSTGGGG RKRGAAPYRI FNLGNTSPVT VPALVAMLER CLMVKARRHV VEMPGNGDVP FTHANISLAR EQLGYKPTTS LEMGLKKFVR WYLSYYGYNR
301: GTHAFRSRL
Best Arabidopsis Sequence Match ( AT4G30440.1 )
(BLAST)
001: MPSIEDELFP STPGKFKIDR SNRQLHRCFA STSTMFLWAL FLIALTASYL SFQSFVDSGS RYLTASWGGI QWEKQVRTSA QIHRSGGISV LVTGATGFVG
101: SHVSLALRKR GDGVVGLDNF NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE NPQSYVHSNI AGLVNLLEIC
201: KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN
301: RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP
401: TTDLETGLKK FVRWYLSYYG YNTKAKLVH
Arabidopsis Description
GAE1GAE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXF7]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.