Factsheet for Os08t0526100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
endoplasmic reticulum 2
golgi 3
plastid 3
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23820.1	Os11t0171500-01	AT4G09570.1	19130088
AT3G23820.1	Os12t0169800-00	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0504000-01	Rice	cytosol, endoplasmic reticulum, golgi	82.22	78.92
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	64.23	69.3
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	63.18	68.17
Os06t0187200-01	Rice	golgi, peroxisome	43.1	66.67
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	61.92	66.67
KRH58854	Soybean	endoplasmic reticulum, golgi	55.65	63.94
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	59.83	63.41
CDX77481	Canola	endoplasmic reticulum	59.83	63.13
Bra014987.1-P	Field mustard	endoplasmic reticulum	59.83	63.0
Solyc09g092330.1.1	Tomato	nucleus	59.41	62.83
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	58.79	62.72
CDX85133	Canola	endoplasmic reticulum	59.83	62.72
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	63.39	62.47
CDY64583	Canola	endoplasmic reticulum	60.04	62.39
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	60.04	62.39
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	60.04	62.39
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	56.49	62.21
AT3G23820.1	Thale cress	endoplasmic reticulum	59.41	61.74
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	58.79	61.62
CDX92990	Canola	endoplasmic reticulum	58.58	61.4
Os02t0791500-01	Rice	endoplasmic reticulum, golgi, plastid	56.07	61.33
CDY53207	Canola	endoplasmic reticulum	58.37	61.32
KRG97348	Soybean	endoplasmic reticulum	56.28	61.28
KRH31569	Soybean	mitochondrion	59.0	61.04
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	55.02	60.74
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	57.53	60.57
Os03t0249500-01	Rice	plastid	55.86	55.17
KRH42756	Soybean	extracellular, golgi, plastid	56.69	54.97
Os09t0323000-01	Rice	cytosol	20.71	26.83
Os05t0595100-01	Rice	plastid	18.62	25.14
Os08t0374800-01	Rice	golgi	20.29	23.77
Os09t0526700-01	Rice	cytosol	17.78	22.79
Os04t0618200-02	Rice	golgi	17.99	21.99
Os08t0129700-01	Rice	mitochondrion	18.2	21.43
Os07t0139400-01	Rice	plasma membrane	18.83	21.38
Os03t0278200-01	Rice	nucleus, plasma membrane	19.25	13.63
Os05t0203400-00	Rice	plastid	8.58	12.28
Os02t0678400-01	Rice	plasma membrane	3.14	4.82
Os03t0249400-01	Rice	nucleus, plasma membrane	0.84	3.15

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EntrezGene:4346094	ProteinID:BAF24209.1	ProteinID:BAT06341.1
EMBL:DQ333337	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016857
GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	EnsemblPlantsGene:Os08g0526100	EnsemblPlants:Os08t0526100-01	PFAM:PF01370
PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF7	UniProt:Q2MJA8	SUPFAM:SSF51735	UniParc:UPI000067D93B
RefSeq:XP_015648495.1	SEG:seg	:	:	:	:

Description

UDP-glucuronic acid 4-epimerase 2NAD(P)-binding domain containing protein. (Os08t0526100-01)

Coordinates

chr8:-:26165068..26167022

Molecular Weight (calculated)

50775.9 Da

IEP (calculated)

10.526

GRAVY (calculated)

-0.011

Length

478 amino acids

Sequence
(BLAST)

001: MMPHSGVVDA AAKGVKLGGG GGGALMVRRV ASGKLLSASS HLLFRATILA TLCLVCLFTV HYPSLLSHSF HLSSAAAAAN GKHRAASRSS HRSLLGSSAA
101: VAYGGAAWEK EVRRSAAPRR DGGLSVLVTG AAGFVGAHCS LALRARGDGV VGLDNFNSYY DPSLKRARQR LLASRGVAVL DADINDAALL ERLFDAARFT
201: HVLHLAAQAG VRYAMRAPQT YVASNVAGLV SVFEVAAKHA DPQPAIVWAS SSSVYGLNTD APFSEEHRTD RPASLYAATK KAGEAIAHAY NHIYGLSITG
301: LRFFTVYGPW GRPDMAYFSF ARSIVAGEPI TLFRTADGAD ARRDFTYIDD VVKGCLGALD TAGESTGTKS GKKRGPAPLR VYNLGNTSPV PVTRMVAILE
401: KLLGRKANKR VVTMPSNGDV PFTHANVSHA ARDFGYRPAT PLDAGLRRFV DWFVHYYKLD TAKIAKGKRK SMAMSAAS

Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)

001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA

Arabidopsis Description

GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.