Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- peroxisome 1
- golgi 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G267600.1 | Wheat | peroxisome | 89.71 | 93.0 |
| TraesCS6A01G257500.1 | Wheat | peroxisome | 89.07 | 92.33 |
| TraesCS6D01G238800.1 | Wheat | peroxisome | 89.07 | 92.33 |
| EES07456 | Sorghum | cytosol, peroxisome, plastid | 86.17 | 87.3 |
| Zm00001d017601_P001 | Maize | extracellular, peroxisome | 85.85 | 86.97 |
| HORVU6Hr1G065690.1 | Barley | peroxisome, plastid | 88.1 | 85.89 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 82.96 | 84.31 |
| VIT_02s0025g04610.t01 | Wine grape | cytosol | 80.71 | 83.11 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 81.67 | 83.01 |
| PGSC0003DMT400058533 | Potato | cytosol | 79.42 | 82.06 |
| CDY45969 | Canola | cytosol | 77.81 | 81.48 |
| CDY45471 | Canola | cytosol | 77.49 | 81.14 |
| Bra027005.1-P | Field mustard | cytosol | 77.49 | 81.14 |
| AT1G63000.1 | Thale cress | cytosol | 78.46 | 81.06 |
| Solyc08g080140.2.1 | Tomato | extracellular | 77.49 | 80.07 |
| KRH77471 | Soybean | cytosol, endoplasmic reticulum | 70.74 | 79.14 |
| CDY57072 | Canola | cytosol, extracellular, peroxisome | 79.1 | 76.16 |
| Bra019776.1-P | Field mustard | cytosol | 78.46 | 76.01 |
| CDX98052 | Canola | cytosol | 75.88 | 73.06 |
| Os03t0278200-01 | Rice | nucleus, plasma membrane | 75.56 | 34.81 |
| Os05t0203400-00 | Rice | plastid | 10.29 | 9.58 |
| Os06t0187200-01 | Rice | golgi, peroxisome | 4.5 | 4.53 |
| Os04t0618200-02 | Rice | golgi | 4.82 | 3.84 |
| Os08t0129700-01 | Rice | mitochondrion | 4.82 | 3.69 |
| Os09t0323000-01 | Rice | cytosol | 4.18 | 3.52 |
| Os05t0595100-01 | Rice | plastid | 3.86 | 3.39 |
| Os08t0526100-01 | Rice | plastid | 4.82 | 3.14 |
| Os07t0139400-01 | Rice | plasma membrane | 4.18 | 3.09 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 4.82 | 3.01 |
| Os02t0791500-01 | Rice | endoplasmic reticulum, golgi, plastid | 4.18 | 2.97 |
| Os08t0374800-01 | Rice | golgi | 3.86 | 2.94 |
| Os09t0526700-01 | Rice | cytosol | 3.22 | 2.68 |
| Os03t0249500-01 | Rice | plastid | 3.54 | 2.27 |
| Os03t0249400-01 | Rice | nucleus, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| MapMan:3.13.6.1 | Gene3D:3.40.50.720 | EntrezGene:9267465 | EMBL:AK071766 | ProteinID:BAD29243.1 | ProteinID:BAD29369.1 |
| ProteinID:BAH91843.1 | ProteinID:BAS80285.1 | ProteinID:EEE57572.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008830 | GO:GO:0008831 | GO:GO:0009058 |
| GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010253 | GO:GO:0016020 | GO:GO:0019305 | GO:GO:0048046 |
| GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | EnsemblPlantsGene:Os02g0678400 | EnsemblPlants:Os02t0678400-01 | PFAM:PF04321 | PANTHER:PTHR10366 |
| PANTHER:PTHR10366:SF405 | UniProt:Q6EPQ1 | InterPro:RmlD-like-bd | SUPFAM:SSF51735 | UniParc:UPI00003CE91D | RefSeq:XP_015627488.1 |
| SEG:seg | : | : | : | : | : |
Description
NAD(P)-binding domain containing protein. (Os02t0678400-01)
Coordinates
chr2:+:27709385..27713141
Molecular Weight (calculated)
34561.1 Da
IEP (calculated)
6.152
GRAVY (calculated)
-0.240
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVATNGSSS STSESAETAQ SQAYKFLIYG RTGWIGGLLG QLCAARGIPF AYGAGRLENR AQLETDIDEV APTHVFNAAG VTGRPNVDWC ETHRTETIRA
101: NVCGTLTLAD VCRARGLVLI NYATGCIFEY DAGHQLGTGI GFKEEDTPNF VGSFYSKTKA MVEELLKNYE NVCTLRVRMP ISSDLSNPRN FITKIARYDK
201: VVDIPNSMTI LDELLPISIE MAKRNLTGIW NFTNPGVVSH NEILEMYRDY IDPNFSWKNF TLEEQAKVIV APRSNNELDC TKLKAEFPEL LSIKDSLVRY
301: VFKPNQKTSK A
101: NVCGTLTLAD VCRARGLVLI NYATGCIFEY DAGHQLGTGI GFKEEDTPNF VGSFYSKTKA MVEELLKNYE NVCTLRVRMP ISSDLSNPRN FITKIARYDK
201: VVDIPNSMTI LDELLPISIE MAKRNLTGIW NFTNPGVVSH NEILEMYRDY IDPNFSWKNF TLEEQAKVIV APRSNNELDC TKLKAEFPEL LSIKDSLVRY
301: VFKPNQKTSK A
001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
Arabidopsis Description
NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.