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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • plastid 2
  • cytosol 2
  • golgi 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:cytosol, golgi, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:golgi
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 nucleus: 23777608
plasma membrane: 27800704
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0678400-01
Os03t0278200-01
Os11t0124300-01
Os12t0122000-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78570.1 Os02t0678400-01 AT1G63000.1 21798944
AT1G78570.1 Os03t0278200-01 AT1G78570.1 21798944
AT1G78570.1 Os11t0124300-01 AT3G54220.1 19228333
AT1G78570.1 Os12t0122000-01 AT3G54220.1 19228333
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER95086 Sorghum cytosol, mitochondrion, plastid 93.93 94.35
TraesCS4A01G099200.1 Wheat cytosol 94.22 94.22
Zm00001d047796_P003 Maize extracellular, nucleus, plasma membrane 93.63 94.05
EER95078 Sorghum cytosol, mitochondrion, peroxisome 93.48 93.9
Zm00001d028654_P002 Maize cytosol 93.04 93.45
TraesCS4D01G206000.1 Wheat mitochondrion 94.22 93.26
TraesCS4B01G205100.3 Wheat mitochondrion 94.07 93.11
HORVU4Hr1G059120.2 Barley plastid 93.78 87.55
CDX97601 Canola cytosol, mitochondrion, plastid 81.19 84.83
Bra027310.1-P Field mustard cytosol, mitochondrion, peroxisome 83.56 84.81
CDX98494 Canola cytosol, mitochondrion, plastid 81.04 84.67
AT1G78570.1 Thale cress cytosol, mitochondrion, peroxisome 83.56 84.3
GSMUA_Achr10P... Banana cytosol, mitochondrion, plastid 79.41 84.28
Bra035048.1-P Field mustard cytosol, mitochondrion, plastid 83.41 84.03
CDY32340 Canola cytosol, mitochondrion, peroxisome 80.0 83.98
AT3G14790.2 Thale cress mitochondrion 82.96 83.96
CDY20084 Canola cytosol, mitochondrion, peroxisome 80.0 83.85
Bra021578.1-P Field mustard cytosol, mitochondrion, plastid 79.7 83.54
CDY40003 Canola cytosol, mitochondrion, plastid 82.52 83.13
CDY24092 Canola cytosol, mitochondrion, peroxisome 81.63 82.86
CDY45116 Canola cytosol, mitochondrion, peroxisome 81.63 82.86
CDY60210 Canola cytosol, mitochondrion, peroxisome 81.78 82.63
Bra038127.1-P Field mustard cytosol, mitochondrion, peroxisome 81.63 82.48
AT1G53500.1 Thale cress cytosol, extracellular, peroxisome 81.48 82.46
Bra039675.1-P Field mustard cytosol, mitochondrion, peroxisome 81.19 82.41
CDY35137 Canola cytosol, mitochondrion, plastid 81.78 82.39
CDY25850 Canola cytosol, mitochondrion, peroxisome 52.15 82.24
Bra026009.1-P Field mustard cytosol, mitochondrion, plastid 81.78 82.14
CDX88455 Canola cytosol, peroxisome, plastid 83.7 79.92
VIT_04s0069g00830.t01 Wine grape cytosol, mitochondrion, plastid 76.15 78.23
PGSC0003DMT400075973 Potato cytosol, mitochondrion, peroxisome 74.37 76.76
Solyc08g069110.2.1 Tomato unclear 73.93 76.65
Os02t0678400-01 Rice plasma membrane 34.81 75.56
KRH04933 Soybean cytosol, mitochondrion, plastid 71.41 74.84
KRH16155 Soybean cytosol 72.44 74.66
Os05t0203400-00 Rice plastid 18.07 36.53
Os05t0595100-01 Rice plastid 13.04 24.86
Os09t0323000-01 Rice cytosol 13.19 24.12
Os06t0187200-01 Rice golgi, peroxisome 10.52 22.98
Os09t0526700-01 Rice cytosol 12.44 22.52
Os04t0618200-02 Rice golgi 13.04 22.51
Os08t0374800-01 Rice golgi 13.19 21.81
Os08t0129700-01 Rice mitochondrion 13.04 21.67
Os07t0139400-01 Rice plasma membrane 13.48 21.62
Os02t0791500-01 Rice endoplasmic reticulum, golgi, plastid 12.89 19.91
Os08t0526100-01 Rice plastid 13.63 19.25
Os03t0249500-01 Rice plastid 13.63 19.01
Os09t0504000-01 Rice cytosol, endoplasmic reticulum, golgi 13.48 18.27
Os03t0249400-01 Rice nucleus, plasma membrane 0.3 1.57
Protein Annotations
MapMan:3.13.6.1Gene3D:3.40.50.720Gene3D:3.90.25.10EntrezGene:4332425ProteinID:ABF95277.1ProteinID:ABF95278.1
ProteinID:ABF95279.1ProteinID:BAF11638.1ProteinID:BAS83535.1ProteinID:BAS83536.1ProteinID:EEE58799.1InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os03g0278200EnsemblPlants:Os03t0278200-01PFAM:PF04321PFAM:PF16363PANTHER:PTHR43000
PANTHER:PTHR43000:SF8UniProt:Q10N92InterPro:RmlD-like-bdSUPFAM:SSF51735UniParc:UPI0000DB41B3RefSeq:XP_015630775.1
RefSeq:XP_015630776.1SEG:seg::::
Description
NAD(P)-binding domain containing protein. (Os03t0278200-01);Similar to RHM1. (Os03t0278200-02)
Coordinates
chr3:+:9445434..9448694
Molecular Weight (calculated)
76069.8 Da
IEP (calculated)
6.946
GRAVY (calculated)
-0.372
Length
675 amino acids
Sequence
(BLAST)
001: MAAYEPKNIL ITGAAGFIAS HVANRLVRNY PHYKIVVLDK LDYCSSLSNL NPSRPSPNFK FVKGDIASAD LVNYLLTTES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG LPLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTVKERRVID VAKDICKLFG LDTEKVIRFV ENRPFNDQRY FLDDQKLKKL
301: GWAERTLWEE GLKKTIEWYT NNPDYWGDVA GALLPHPRML MTPGVERHNW TDEIKSLSTS PDEAKESSTA VPAATAKSTS SAPQKASYKF LIYGRTGWIG
401: GLLGKICEKQ GIPYEYGKGR LEERSQLLQD IRNVKPTHVF NAAGVTGRPN VDWCETHKQD TIRTNVVGTL NLADVCREQG LLMINYATGC IFEYDAKHPE
501: GSGIGFKEED KPNFTGSYYS KTKAMVEELL QEYDNVCTLR VRMPISSDLS NPRNFITKIA RYDKVVNIPN SMTILDELLP ISIEMAKRDC RGIWNFTNPG
601: VVSHNEILEM YKKYLNPDFK WTNFTLEEQA KVIVAPRSNN EMDASKLKSE FPELLSIKDS LVKYVFEPNR KVPAN
Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)
001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT
Arabidopsis Description
RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.