Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- extracellular 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45116 | Canola | cytosol, mitochondrion, peroxisome | 94.45 | 94.74 |
| CDY24092 | Canola | cytosol, mitochondrion, peroxisome | 94.3 | 94.59 |
| CDY60210 | Canola | cytosol, mitochondrion, peroxisome | 94.3 | 94.16 |
| CDY25850 | Canola | cytosol, mitochondrion, peroxisome | 60.42 | 94.16 |
| Bra038127.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 94.15 | 94.01 |
| Bra039675.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 93.7 | 93.98 |
| AT3G14790.2 | Thale cress | mitochondrion | 91.45 | 91.45 |
| AT1G78570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 85.91 | 85.65 |
| GSMUA_Achr4P10430_001 | Banana | cytosol, extracellular, mitochondrion | 83.06 | 85.36 |
| GSMUA_Achr3P31810_001 | Banana | cytosol, mitochondrion, peroxisome | 76.61 | 82.29 |
| Zm00001d047796_P003 | Maize | extracellular, nucleus, plasma membrane | 82.31 | 81.7 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 77.81 | 81.6 |
| Os03t0278200-01 | Rice | nucleus, plasma membrane | 82.46 | 81.48 |
| TraesCS4A01G099200.1 | Wheat | cytosol | 82.31 | 81.33 |
| EER95086 | Sorghum | cytosol, mitochondrion, plastid | 81.71 | 81.1 |
| EER95078 | Sorghum | cytosol, mitochondrion, peroxisome | 81.41 | 80.8 |
| TraesCS4D01G206000.1 | Wheat | mitochondrion | 82.31 | 80.5 |
| TraesCS4B01G205100.3 | Wheat | mitochondrion | 82.16 | 80.35 |
| Zm00001d028654_P002 | Maize | cytosol | 80.51 | 79.91 |
| VIT_04s0069g00830.t01 | Wine grape | cytosol, mitochondrion, plastid | 76.91 | 78.08 |
| AT1G63000.1 | Thale cress | cytosol | 34.93 | 77.41 |
| PGSC0003DMT400075973 | Potato | cytosol, mitochondrion, peroxisome | 75.56 | 77.06 |
| Solyc08g069110.2.1 | Tomato | unclear | 74.81 | 76.65 |
| HORVU4Hr1G059120.2 | Barley | plastid | 82.16 | 75.8 |
| GSMUA_Achr3P31820_001 | Banana | cytosol, mitochondrion, plastid | 68.52 | 75.54 |
| KRH04933 | Soybean | cytosol, mitochondrion, plastid | 72.56 | 75.16 |
| KRH16155 | Soybean | cytosol | 73.61 | 74.96 |
| AT1G64440.1 | Thale cress | cytosol, golgi | 12.89 | 24.71 |
| AT1G63180.1 | Thale cress | cytosol | 12.74 | 24.22 |
| AT4G23920.1 | Thale cress | cytosol | 12.59 | 24.0 |
| AT1G12780.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 12.44 | 23.65 |
| AT4G10960.1 | Thale cress | golgi | 12.29 | 23.36 |
| AT4G20460.1 | Thale cress | golgi, mitochondrion | 13.64 | 22.14 |
| AT2G34850.2 | Thale cress | cytosol | 7.8 | 22.03 |
| AT1G30620.4 | Thale cress | golgi, mitochondrion | 13.49 | 21.48 |
| AT4G00110.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 13.79 | 21.4 |
| AT4G12250.1 | Thale cress | cytosol, endoplasmic reticulum, golgi | 13.94 | 21.33 |
| AT1G02000.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 13.79 | 21.2 |
| AT2G45310.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 13.79 | 21.05 |
| AT4G30440.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 13.04 | 20.28 |
| AT5G44480.1 | Thale cress | mitochondrion | 13.04 | 19.95 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 13.64 | 19.78 |
| AT3G28530.1 | Thale cress | cytosol, nucleus | 0.45 | 12.0 |
Protein Annotations
| KEGG:00521+4.2.1.46 | KEGG:00523+4.2.1.46 | KEGG:00525+4.2.1.46 | MapMan:3.13.6.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 |
| EntrezGene:841785 | UniProt:A0A178W591 | ProteinID:AAF78439.1 | ProteinID:AAG51981.1 | ProteinID:AEE32949.1 | EMBL:AJ565874 |
| ArrayExpress:AT1G53500 | EnsemblPlantsGene:AT1G53500 | RefSeq:AT1G53500 | TAIR:AT1G53500 | RefSeq:AT1G53500-TAIR-G | EnsemblPlants:AT1G53500.1 |
| TAIR:AT1G53500.1 | EMBL:AY328518 | Unigene:At.20215 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008460 | GO:GO:0009058 | GO:GO:0009225 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010192 | GO:GO:0010214 | GO:GO:0010253 | GO:GO:0010280 |
| GO:GO:0010489 | GO:GO:0010490 | GO:GO:0016491 | GO:GO:0016829 | GO:GO:0016853 | GO:GO:0050377 |
| GO:GO:0055114 | Symbol:MUM4 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_564633.2 | ProteinID:OAP13336.1 |
| PFAM:PF04321 | PFAM:PF16363 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005020 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR43000 |
| PANTHER:PTHR43000:SF8 | UniProt:Q9LPG6 | InterPro:RmlD-like-bd | SUPFAM:SSF51735 | TIGRFAMs:TIGR01181 | UniParc:UPI00000A46AF |
| InterPro:dTDP_Gluc_deHydtase | SEG:seg | : | : | : | : |
Description
RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
Coordinates
chr1:-:19966944..19969757
Molecular Weight (calculated)
75229.6 Da
IEP (calculated)
6.409
GRAVY (calculated)
-0.399
Length
667 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.