Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71965 | Canola | cytosol, mitochondrion | 56.69 | 97.9 |
| CDX78998 | Canola | mitochondrion | 97.57 | 97.57 |
| CDX82768 | Canola | mitochondrion | 97.32 | 97.32 |
| Bra020917.1-P | Field mustard | golgi, mitochondrion | 95.62 | 95.62 |
| Bra013466.1-P | Field mustard | mitochondrion | 94.89 | 84.23 |
| AT2G34850.2 | Thale cress | cytosol | 47.69 | 83.05 |
| AT1G30620.4 | Thale cress | golgi, mitochondrion | 82.0 | 80.43 |
| PGSC0003DMT400080637 | Potato | golgi | 77.62 | 79.75 |
| Os04t0618200-02 | Rice | golgi | 75.67 | 79.54 |
| AT5G44480.1 | Thale cress | mitochondrion | 84.18 | 79.36 |
| KRH36892 | Soybean | golgi, mitochondrion | 79.56 | 78.8 |
| Solyc02g030230.2.1 | Tomato | mitochondrion | 79.32 | 78.37 |
| KRH43065 | Soybean | golgi, mitochondrion, plastid | 79.32 | 78.37 |
| KRH11871 | Soybean | golgi, plastid | 78.83 | 78.07 |
| Solyc02g069580.2.1 | Tomato | golgi, mitochondrion | 78.83 | 77.7 |
| EER95001 | Sorghum | mitochondrion | 76.89 | 77.64 |
| GSMUA_Achr3P23390_001 | Banana | mitochondrion | 78.59 | 77.46 |
| KRH59194 | Soybean | golgi, mitochondrion | 78.35 | 77.4 |
| Os08t0129700-01 | Rice | mitochondrion | 76.4 | 77.34 |
| GSMUA_Achr11P... | Banana | cytosol, golgi | 73.24 | 76.98 |
| PGSC0003DMT400054459 | Potato | mitochondrion | 78.1 | 76.98 |
| GSMUA_Achr8P33320_001 | Banana | mitochondrion | 77.86 | 76.74 |
| GSMUA_Achr11P... | Banana | mitochondrion | 77.86 | 76.74 |
| HORVU2Hr1G104110.1 | Barley | mitochondrion, plastid | 76.89 | 76.7 |
| TraesCS7D01G307500.1 | Wheat | golgi, mitochondrion | 75.43 | 76.54 |
| HORVU7Hr1G074300.2 | Barley | golgi | 75.43 | 76.54 |
| TraesCS2B01G482000.1 | Wheat | golgi | 76.64 | 76.46 |
| TraesCS2A01G460400.1 | Wheat | unclear | 76.64 | 76.46 |
| HORVU5Hr1G077110.3 | Barley | mitochondrion | 78.1 | 76.25 |
| TraesCS2D01G460600.1 | Wheat | mitochondrion, plastid | 76.4 | 76.21 |
| KXG27129 | Sorghum | mitochondrion, plastid | 76.89 | 76.14 |
| TraesCS7A01G311100.1 | Wheat | golgi | 74.94 | 76.05 |
| TraesCS5A01G291300.1 | Wheat | golgi | 77.86 | 76.01 |
| TraesCS5B01G290300.1 | Wheat | mitochondrion | 77.62 | 75.77 |
| TraesCS5D01G298700.1 | Wheat | mitochondrion | 77.62 | 75.77 |
| Os07t0139400-01 | Rice | plasma membrane | 77.62 | 75.77 |
| TraesCS7B01G210700.2 | Wheat | golgi | 75.43 | 75.06 |
| GSMUA_Achr4P31860_001 | Banana | mitochondrion | 75.67 | 74.76 |
| EER95854 | Sorghum | mitochondrion, plastid | 76.64 | 73.26 |
| AT4G23920.1 | Thale cress | cytosol | 35.52 | 41.71 |
| AT1G64440.1 | Thale cress | cytosol, golgi | 35.28 | 41.67 |
| AT4G10960.1 | Thale cress | golgi | 35.28 | 41.31 |
| AT1G12780.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 32.6 | 38.18 |
| Zm00001d017999_P002 | Maize | mitochondrion | 28.71 | 37.94 |
| AT1G63180.1 | Thale cress | cytosol | 32.36 | 37.89 |
| Zm00001d010657_P001 | Maize | golgi, plastid, vacuole | 31.39 | 37.28 |
| AT3G28530.1 | Thale cress | cytosol, nucleus | 1.7 | 28.0 |
| AT4G12250.1 | Thale cress | cytosol, endoplasmic reticulum, golgi | 23.11 | 21.79 |
| AT4G00110.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 21.17 | 20.23 |
| AT2G45310.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 21.41 | 20.14 |
| AT4G30440.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 20.92 | 20.05 |
| AT1G02000.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 21.17 | 20.05 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 21.9 | 19.57 |
| AT1G78570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 22.63 | 13.9 |
| AT1G53500.1 | Thale cress | cytosol, extracellular, peroxisome | 22.14 | 13.64 |
| AT3G14790.2 | Thale cress | mitochondrion | 21.9 | 13.49 |
| AT1G63000.1 | Thale cress | cytosol | 3.41 | 4.65 |
Protein Annotations
| KEGG:00052+5.1.3.2 | KEGG:00520+5.1.3.2 | MapMan:3.13.7.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EntrezGene:827794 |
| UniProt:A0A178V5M4 | ProteinID:AEE84335.1 | ArrayExpress:AT4G20460 | EnsemblPlantsGene:AT4G20460 | RefSeq:AT4G20460 | TAIR:AT4G20460 |
| RefSeq:AT4G20460-TAIR-G | EnsemblPlants:AT4G20460.1 | TAIR:AT4G20460.1 | EMBL:AY133709 | Unigene:At.32717 | ProteinID:CAB45812.1 |
| ProteinID:CAB79046.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003978 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 | GO:GO:0006012 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016853 | GO:GO:0032580 | GO:GO:0033358 | GO:GO:0045227 | GO:GO:0050373 |
| InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_193779.2 | ProteinID:OAP00282.1 | PFAM:PF16363 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR43349 | PANTHER:PTHR43349:SF14 | UniProt:Q9SUN3 |
| SUPFAM:SSF51735 | TIGRFAMs:TIGR01179 | InterPro:UDP_G4E | UniParc:UPI0001A7B239 | : | : |
Description
Probable UDP-arabinose 4-epimerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUN3]
Coordinates
chr4:-:11029736..11032677
Molecular Weight (calculated)
45157.4 Da
IEP (calculated)
9.349
GRAVY (calculated)
-0.212
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSFSRARSQ GRNTRPLGGG MEYLEPKRKS NVMGKIILVV SLTALCIFML KHAPSFTSPT AFSRSEEGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD
101: NLSRGNLGAV KVLQGLFPEP GRLQFIYADL GDAKAVDKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE AVARHKVKKL IYSSTCATYG
201: EPDKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT
301: CVRDYIDVTD LVDAHVKALE KAKPRNVGIY NVGTGKGRSV KEFVEACKKA TGVDIKVDFL PRRPGDYAEV YSDPAKILRD LNWSARYTNL QESLEVAWKW
401: QKTHPHGYAS S
101: NLSRGNLGAV KVLQGLFPEP GRLQFIYADL GDAKAVDKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE AVARHKVKKL IYSSTCATYG
201: EPDKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT
301: CVRDYIDVTD LVDAHVKALE KAKPRNVGIY NVGTGKGRSV KEFVEACKKA TGVDIKVDFL PRRPGDYAEV YSDPAKILRD LNWSARYTNL QESLEVAWKW
401: QKTHPHGYAS S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.