Factsheet for GSMUA_Achr3P23390_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 6
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	92.57	92.57
GSMUA_Achr8P33320_001	Banana	mitochondrion	87.05	87.05
GSMUA_Achr11P...	Banana	cytosol, golgi	80.82	86.19
AT2G34850.2	Thale cress	cytosol	48.44	85.59
Solyc07g043550.2.1	Tomato	cytosol, unclear	61.39	84.77
Os08t0129700-01	Rice	mitochondrion	82.01	84.24
EER95001	Sorghum	mitochondrion	81.3	83.29
HORVU7Hr1G074300.2	Barley	golgi	80.34	82.72
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	80.1	82.47
CDY71965	Canola	cytosol, mitochondrion	47.0	82.35
TraesCS7A01G311100.1	Wheat	golgi	79.62	81.98
TraesCS7B01G210700.2	Wheat	golgi	80.1	80.87
PGSC0003DMT400080637	Potato	golgi	77.22	80.5
GSMUA_Achr4P31860_001	Banana	mitochondrion	80.1	80.29
PGSC0003DMT400041159	Potato	golgi, mitochondrion	74.58	80.15
CDY09555	Canola	mitochondrion	80.34	79.76
Bra032409.1-P	Field mustard	mitochondrion	79.86	79.47
CDY02312	Canola	mitochondrion	79.86	79.29
Solyc02g030230.2.1	Tomato	mitochondrion	78.9	79.09
CDY52524	Canola	golgi	80.34	79.01
KRH36892	Soybean	golgi, mitochondrion	78.42	78.8
AT4G20460.1	Thale cress	golgi, mitochondrion	77.46	78.59
CDX78998	Canola	mitochondrion	77.46	78.59
KRH11871	Soybean	golgi, plastid	78.18	78.55
AT1G30620.4	Thale cress	golgi, mitochondrion	78.9	78.52
Solyc12g006410.1.1	Tomato	unclear	75.06	78.45
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	78.42	78.42
CDX82768	Canola	mitochondrion	77.22	78.35
CDY31644	Canola	golgi	79.62	78.3
KRH59194	Soybean	golgi, mitochondrion	77.94	78.12
PGSC0003DMT400054459	Potato	mitochondrion	77.94	77.94
CDY29113	Canola	golgi	76.02	76.94
KRH43065	Soybean	golgi, mitochondrion, plastid	76.74	76.92
Bra027557.1-P	Field mustard	golgi	75.78	76.7
CDY13102	Canola	golgi	75.78	76.7
Bra020917.1-P	Field mustard	golgi, mitochondrion	75.54	76.64
Bra033746.1-P	Field mustard	golgi	75.54	76.46
CDY49015	Canola	golgi	75.3	76.21
Zm00001d047683_P003	Maize	mitochondrion	77.46	76.18
CDY49498	Canola	golgi	75.06	75.97
Zm00001d028825_P001	Maize	golgi, mitochondrion	76.5	75.59
Bra005387.1-P	Field mustard	golgi, mitochondrion	80.34	73.79
AT5G44480.1	Thale cress	mitochondrion	76.26	72.94
Bra013466.1-P	Field mustard	mitochondrion	76.26	68.68
GSMUA_Achr4P02670_001	Banana	golgi	36.21	43.27
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	35.25	42.12
GSMUA_Achr5P09200_001	Banana	golgi	35.73	41.97
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	34.53	41.26
GSMUA_Achr1P18740_001	Banana	cytosol	32.61	38.42
GSMUA_Achr5P13620_001	Banana	cytosol	31.89	37.89
Zm00001d014509_P001	Maize	cytosol	24.22	35.19
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	35.73	34.41
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	34.77	34.2
GSMUA_Achr9P06140_001	Banana	plastid	35.73	28.6
GSMUA_Achr6P26620_001	Banana	plastid	36.45	28.31
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	21.82	22.47
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	20.62	21.29
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	21.1	21.26
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	20.86	20.96
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	19.9	19.3
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	21.1	19.17
GSMUA_Achr5P25290_001	Banana	mitochondrion	5.28	18.97
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	20.14	18.96
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	20.14	18.96
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	20.14	18.92
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	22.06	18.0
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	20.14	17.32
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	15.83	17.14
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	21.1	13.56
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	13.67	12.34
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	18.23	12.24
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	17.99	11.79
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	17.03	11.74
GSMUA_Achr4P29070_001	Banana	cytosol	0.96	6.06
GSMUA_Achr4P02550_001	Banana	mitochondrion	6.47	5.92
GSMUA_Achr5P10430_001	Banana	cytosol	3.84	5.23
GSMUA_Achr1P03840_001	Banana	cytosol	3.36	4.58
GSMUA_Achr4P29060_001	Banana	cytosol	2.16	4.11

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005575	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	EnsemblPlantsGene:GSMUA_Achr3G23390_001	EnsemblPlants:GSMUA_Achr3P23390_001
EnsemblPlants:GSMUA_Achr3T23390_001	UniProt:M0SH55	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43349
PANTHER:PTHR43349:SF14	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	TMHMM:TMhelix	InterPro:UDP_G4E	UniParc:UPI000295CB50

Description

Probable UDP-arabinose 4-epimerase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23390_001]

Coordinates

chr3:-:24260831..24266292

Molecular Weight (calculated)

46065.5 Da

IEP (calculated)

9.123

GRAVY (calculated)

-0.190

Length

417 amino acids

Sequence
(BLAST)

001: MLPSNRSRSQ PRAVRPWPLS GMDYSDSRRK PHILAKLLMV VILTAFCVLI LKQSPSFSGT SVFSRHEPGV THVLVTGGAG YIGSHATLRL LKDSYRVTIV
101: DNLSRGNLGA IKVLQQMFPE PGRLQFIYAD LGDARAVNHI FAENAFDAVM HFAAVAYVGE STLEPLRYYH NITANTLVIL EAMAAHGVKT LIYSSTCATY
201: GEPEKMPITE ETPQLPINPY GKAKKMAEDI ILDFSKRSNM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ALGIIPGLKV KGTDYPTSDG
301: TCIRDYIDVT DLVDAHVKAL DKAKPSKVGI FNVGTGKGRS VKEFVEACKK ATGVNIKVDY LERRPGDYAE VYSDPSKINH ELNWTARYTD LQESLSIAWR
401: WQKSHPNGYG TRSVMAV

Best Arabidopsis Sequence Match ( AT1G30620.2 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.