Factsheet for PGSC0003DMT400041159

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4
golgi 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g043550.2.1	Tomato	cytosol, unclear	77.58	99.67
AT2G34850.2	Thale cress	cytosol	50.0	82.2
GSMUA_Achr11P...	Banana	cytosol, golgi	76.55	75.96
Os04t0618200-02	Rice	golgi	76.03	75.45
Bra032409.1-P	Field mustard	mitochondrion	80.93	74.94
CDY02312	Canola	mitochondrion	80.93	74.76
PGSC0003DMT400080637	Potato	golgi	77.06	74.75
GSMUA_Achr3P23390_001	Banana	mitochondrion	80.15	74.58
CDY09555	Canola	mitochondrion	80.67	74.52
Os08t0129700-01	Rice	mitochondrion	77.58	74.14
HORVU7Hr1G074300.2	Barley	golgi	77.06	73.83
AT1G30620.4	Thale cress	golgi, mitochondrion	79.64	73.75
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	76.8	73.58
GSMUA_Achr11P...	Banana	mitochondrion	78.87	73.38
VIT_03s0017g00980.t01	Wine grape	golgi	78.87	73.38
CDY52524	Canola	golgi	79.9	73.11
TraesCS7A01G311100.1	Wheat	golgi	76.29	73.09
EER95001	Sorghum	mitochondrion	76.29	72.73
GSMUA_Achr8P33320_001	Banana	mitochondrion	78.09	72.66
KRH36892	Soybean	golgi, mitochondrion	77.58	72.53
GSMUA_Achr4P31860_001	Banana	mitochondrion	77.58	72.36
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	76.8	72.33
CDY31644	Canola	golgi	78.87	72.17
TraesCS7B01G210700.2	Wheat	golgi	76.8	72.16
KRH43065	Soybean	golgi, mitochondrion, plastid	77.32	72.12
KRH11871	Soybean	golgi, plastid	77.06	72.05
KRH59194	Soybean	golgi, mitochondrion	77.06	71.88
TraesCS2A01G460400.1	Wheat	unclear	76.03	71.6
TraesCS2B01G482000.1	Wheat	golgi	76.03	71.6
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	76.03	71.6
Os07t0139400-01	Rice	plasma membrane	77.58	71.5
KXG27129	Sorghum	mitochondrion, plastid	75.77	70.84
HORVU5Hr1G077110.3	Barley	mitochondrion	76.29	70.31
PGSC0003DMT400054459	Potato	mitochondrion	75.52	70.26
TraesCS5D01G298700.1	Wheat	mitochondrion	76.03	70.07
TraesCS5A01G291300.1	Wheat	golgi	76.03	70.07
TraesCS5B01G290300.1	Wheat	mitochondrion	75.77	69.83
EER95854	Sorghum	mitochondrion, plastid	77.06	69.53
Bra005387.1-P	Field mustard	golgi, mitochondrion	79.38	67.84
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	38.66	43.1
PGSC0003DMT400031994	Potato	golgi	37.63	41.6
PGSC0003DMT400007898	Potato	cytosol	34.02	37.61
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	32.99	36.99
Zm00001d017999_P002	Maize	mitochondrion	28.09	35.05
PGSC0003DMT400059215	Potato	plastid	13.4	23.32
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	25.52	22.2
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	22.94	20.51
PGSC0003DMT400020223	Potato	endoplasmic reticulum	22.16	19.95
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	22.94	19.87
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	22.16	19.77
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	21.39	19.53
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	21.13	18.85
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	20.88	18.79
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	21.65	18.5
PGSC0003DMT400059216	Potato	cytosol	5.67	14.67
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	22.68	13.46
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	21.65	12.46
PGSC0003DMT400054754	Potato	cytosol, mitochondrion, plastid	21.13	12.17
PGSC0003DMT400058533	Potato	cytosol	3.61	4.65

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	EntrezGene:102603888	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150
GO:GO:0008152	GO:GO:0016853	UniProt:M1BB03	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363
EnsemblPlantsGene:PGSC0003DMG400015927	PGSC:PGSC0003DMG400015927	EnsemblPlants:PGSC0003DMT400041159	PANTHER:PTHR43349	PANTHER:PTHR43349:SF14	SUPFAM:SSF51735
TIGRFAMs:TIGR01179	TMHMM:TMhelix	InterPro:UDP_G4E	UniParc:UPI0002951C5D	RefSeq:XP_006357885.1	SEG:seg

Description

UDP-arabinose 4-epimerase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015927]

Coordinates

chr7:+:42045468..42049452

Molecular Weight (calculated)

42858.4 Da

IEP (calculated)

8.972

GRAVY (calculated)

-0.173

Length

388 amino acids

Sequence
(BLAST)

001: MDFVELKRRS STSRRLLLLA GIAAICLFIF RNSSSFSTSV KFSQHEPGVT HVLVTGGAGY IGSHASLRLL KDSYRVTIVD NLSRGNMGSV KVLQELFPEP
101: GRLQFIYADL GDAAAVNKIF SQNAFDAVMH FAAVAYVGES TQEPLRYYHN ITSNTLLLVK AMAAHGVKTL IYSSTCATYG EPEKMPITEV TPQSPINPYG
201: KAKKMAEDII LDFSKTSDMA VMILRYFNVI GSDPEGRLGE APPPELREQG RISGACFDAA RGIIPGLKIR GVDYTTPDGT CVRDYIDVTD LIDAHVKALE
301: HAKPSKVGIY NVGTGKGSSV KQFVEACKKA TGVDIKIDYL NRRPGDYAEV YSDPSKIRRE LNWIARYSLE ESLAIAWRWQ KVHRNGYN

Best Arabidopsis Sequence Match ( AT1G30620.2 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.