Factsheet for PGSC0003DMT400054754

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007480.2.1	Tomato	nucleus	86.5	98.81
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	88.13	88.13
GSMUA_Achr4P02550_001	Banana	mitochondrion	54.75	80.92
PGSC0003DMT400058533	Potato	cytosol	35.91	80.4
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	74.33	76.61
CDX81794	Canola	plastid	34.72	67.44
PGSC0003DMT400059215	Potato	plastid	9.2	27.8
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	13.65	26.44
PGSC0003DMT400031994	Potato	golgi	13.2	25.36
PGSC0003DMT400007898	Potato	cytosol	12.46	23.93
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	14.84	22.42
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	13.95	21.61
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	13.65	21.15
PGSC0003DMT400041159	Potato	golgi, mitochondrion	12.17	21.13
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	13.5	21.11
PGSC0003DMT400020223	Potato	endoplasmic reticulum	13.5	21.11
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	13.8	20.76
PGSC0003DMT400080637	Potato	golgi	12.31	20.75
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	13.06	20.71
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	13.2	20.51
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	13.5	20.04
PGSC0003DMT400054459	Potato	mitochondrion	11.87	19.18
PGSC0003DMT400059216	Potato	cytosol	4.01	18.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400054754	EnsemblPlantsGene:PGSC0003DMG400021254	EntrezGene:102579690	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363
PFscan:PS51257	PGSC:PGSC0003DMG400021254	RefSeq:XP_006360030.1	RefSeq:XP_015170134.1	SUPFAM:SSF51735	UniParc:UPI000294EBFE
UniProt:M1BWT8	MapMan:3.13.6.1	:	:	:	:

Description

Rhamnose synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400021254]

Coordinates

chr10:-:2522566..2525810

Molecular Weight (calculated)

75573.2 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.342

Length

674 amino acids

Sequence
(BLAST)

001: MSTYTPKNIL ITGAAGFIAC HVANRLVRSY PDYKIVVLDK LDYCSNLKNL IPSRSSPNFK FVKGDIASAD LVNYLLITES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIKRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG KPLPIHGDGC NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTTKERRVID VAQDICKLFN IDSEKVIQFV ENRPFNDQRY FLDDQKLKNL
301: GWSETTMWEE GLKKTIEWYK NNPDWWGDVS GALLPHPRML MMPGDIERNL DGAEKYDSGS TEFSGKSNET KTAAPASKTS NVPQKSPFKF LIYGRTGWIG
401: GVLGKLCEKQ GIPYEYGRGR LEDRSKLLAD INSVKPTHVF NAAGVTGRPN VDWCESHKPE TIRTNVAGTL NLADVCRENG LLMVNFATGC IFEYDAAHPE
501: GSGIGFKEED TPNFAGSFYS KTKAMVEDLL KNYDNVCTLR VRMPISSDLS NPRNFITKIS RYNKVVNIPN SMTILDELLP ISIEMAKRNL RGIWNFTNPG
601: VVSHNEILEM YKKYIDPAFT YANFTVEEQA KVIVAARSNN EMDASKLKKE FPELLSIKES LIKNVFEPNK KTSA

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.