Factsheet for PGSC0003DMT400007898

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007898

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12780.1	PGSC0003DMT400007898	AT1G12780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080570.2.1	Tomato	cytosol	98.29	98.29
AT1G12780.1	Thale cress	cytoskeleton, cytosol, peroxisome	80.34	80.34
VIT_02s0025g04210.t01	Wine grape	cytosol	79.77	80.0
Bra016757.1-P	Field mustard	cytosol	79.2	79.2
CDY21065	Canola	cytosol	79.2	79.2
CDY31278	Canola	cytosol	79.2	79.2
KRH41129	Soybean	nucleus	78.63	78.86
AT1G63180.1	Thale cress	cytosol	78.63	78.63
KRH59827	Soybean	extracellular, golgi	78.35	78.57
CDY47346	Canola	cytosol	78.35	78.35
CDY49193	Canola	cytosol	78.06	78.06
Bra027626.1-P	Field mustard	cytosol	77.49	77.49
GSMUA_Achr1P18740_001	Banana	cytosol	77.49	76.84
CDY69000	Canola	cytosol	72.36	75.82
Bra019785.1-P	Field mustard	cytosol	72.08	75.52
GSMUA_Achr5P13620_001	Banana	cytosol	75.5	75.5
Bra039253.1-P	Field mustard	cytosol	73.79	74.64
Zm00001d021249_P003	Maize	cytosol	70.37	68.04
KXG36042	Sorghum	cytosol	70.09	67.58
PGSC0003DMT400031994	Potato	golgi	66.67	66.67
TraesCS5B01G315700.1	Wheat	cytosol	68.95	65.76
TraesCS5A01G314800.1	Wheat	cytosol	68.95	65.76
TraesCS5D01G321100.1	Wheat	cytosol	68.66	65.31
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	62.96	63.51
Os09t0526700-01	Rice	cytosol	66.95	63.0
HORVU5Hr1G080860.10	Barley	mitochondrion	68.66	56.84
CDY60264	Canola	plastid	79.2	45.5
PGSC0003DMT400041159	Potato	golgi, mitochondrion	37.61	34.02
PGSC0003DMT400080637	Potato	golgi	38.18	33.5
PGSC0003DMT400054459	Potato	mitochondrion	38.46	32.37
PGSC0003DMT400059215	Potato	plastid	16.81	26.46
PGSC0003DMT400020223	Potato	endoplasmic reticulum	27.35	22.27
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	26.78	22.12
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	27.35	21.43
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	27.07	21.3
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	26.21	21.2
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	25.64	20.88
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	26.5	20.48
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	25.36	20.46
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	25.07	20.23
PGSC0003DMT400059216	Potato	cytosol	7.41	17.33
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	23.93	12.84
PGSC0003DMT400054754	Potato	cytosol, mitochondrion, plastid	23.93	12.46
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	22.79	11.87
PGSC0003DMT400058533	Potato	cytosol	3.7	4.32

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	EntrezGene:102577764	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10
ProteinID:AAP97493	ProteinID:AAP97493.1	EMBL:AY221085	GO:GO:0003674	GO:GO:0003824	GO:GO:0003978
GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_001275046.1	PFAM:PF16363	EnsemblPlantsGene:PGSC0003DMG400003054	PGSC:PGSC0003DMG400003054	EnsemblPlants:PGSC0003DMT400007898
PANTHER:PTHR43725	PANTHER:PTHR43725:SF9	UniProt:Q6XP48	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	InterPro:UDP_G4E
UniParc:UPI000023C6B6	:	:	:	:	:

Description

UDP-Glc-4-epimerase [Source:PGSC_GENE;Acc:PGSC0003DMG400003054]

Coordinates

chr8:-:54253314..54256483

Molecular Weight (calculated)

39217.1 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.289

Length

351 amino acids

Sequence
(BLAST)

001: MGVQCQENIL VTGGAGFIGT HTVVQLLNEG FKVTIIDNFH NSVEEAVDRV RELVGPQLSQ NLEFHLGDIR NKDDLEKLFS KKEFAAVVHF AGLKAVGESV
101: VQPFLYFENN LIGSITLYSV MAKYNCKKLV FSSSATVYGQ PEKVPCVEDF ELKAMNPYGR TKLFLEDIAR DIQKADQEWN IILLRYFNPV GAHESGKLGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGND YPTPDGTAIR DYIHVMDLAD GHVVALQRLL RQNHLGCVAY NLGTGKGKSV LEMVAAFERA SGKKIPLKMC
301: PRRPGDATAV YASTEKAEKE LGWKAKYGIN EMCRDQWKWA SQNPWGYQSK P

Best Arabidopsis Sequence Match ( AT1G12780.1 )
(BLAST)

001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L

Arabidopsis Description

UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.