Factsheet for PGSC0003DMT400018192

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062130.2.1	Tomato	extracellular, unclear	96.14	96.14
PGSC0003DMT400054754	Potato	cytosol, mitochondrion, plastid	88.13	88.13
KRH13001	Soybean	cytosol, mitochondrion, plastid	86.2	86.98
KRH43408	Soybean	nucleus	86.05	86.83
KRH21867	Soybean	cytosol, mitochondrion, plastid	85.61	86.25
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	86.35	86.22
KRH27429	Soybean	cytosol, mitochondrion, plastid	85.46	86.1
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	82.05	82.91
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	81.9	82.76
PGSC0003DMT400058533	Potato	cytosol	35.76	80.07
KXG21627	Sorghum	mitochondrion	79.38	77.99
Zm00001d037784_P002	Maize	endoplasmic reticulum	80.42	77.87
HORVU5Hr1G007050.2	Barley	plastid	81.9	76.14
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	73.59	75.84
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	72.85	74.39
KRH46062	Soybean	cytosol	65.88	72.55
PGSC0003DMT400059215	Potato	plastid	9.35	28.25
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	13.2	25.57
PGSC0003DMT400031994	Potato	golgi	12.76	24.5
PGSC0003DMT400007898	Potato	cytosol	11.87	22.79
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	14.54	21.97
PGSC0003DMT400041159	Potato	golgi, mitochondrion	12.46	21.65
PGSC0003DMT400080637	Potato	golgi	12.76	21.5
PGSC0003DMT400020223	Potato	endoplasmic reticulum	13.65	21.35
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	13.35	21.18
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	13.95	20.98
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	13.5	20.92
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	13.35	20.74
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	13.35	20.69
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	13.2	20.65
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	13.8	20.48
PGSC0003DMT400054459	Potato	mitochondrion	12.31	19.9
PGSC0003DMT400059216	Potato	cytosol	3.71	16.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400018192	EnsemblPlantsGene:PGSC0003DMG400007059	EntrezGene:102589223	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363
PGSC:PGSC0003DMG400007059	RefSeq:XP_006348335.1	SUPFAM:SSF51735	UniParc:UPI000296285F	UniProt:M1AA71	MapMan:3.13.6.1

Description

RHM1/ROL1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007059]

Coordinates

chr7:+:52279026..52282429

Molecular Weight (calculated)

75712.0 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.418

Length

674 amino acids

Sequence
(BLAST)

001: MSNYTPKNIL ITGAAGFIAS HVANRLVRSY PEYNIVVLDK LDYCSNLKNL SPSRSSPNFK FVKGDIGSAD LVNYLLMTEN IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV SGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP IITTRGNNVY GPNQFPEKLI
201: PKFILLSLQG KPLPIQGDGS NVRSYLYCED VAEAFEVVLH RGDVGHVYNI GTKKERRVID VAKDISNLFN RDPDASIQFV ENRPFNDQRY FLDDQKLKNL
301: GWSQKTTWEE GLKKTMDWYV NNPDWWGDVS GALLPHPRMP MMPGGVERNW YGAEKDDSGS SEVSGNANHT RMVVPASKIS NSPSKSPYKF LIYGRTGWIG
401: GLLSKLCEKQ GIPYEYGKGR LEDRSQLLSD IHAVKPTHVF NAAGVTGRPN VDWCESHKTE TIRTNVAGTL NLADVCKENG LLMMNFATGC IFEYNAAHPE
501: GSGIGFKEED SPNFTGSFYS KTKAMVEELL KEYPNVCTLR VRMPISSDLN NPRNFITKIS RYNKVVNIPN SMTILDELLP ISIEMAKRNL TGIWNFTNPG
601: VVSHNEILEM YKKYINPEFK WSNFTLDEQA KVLVAPRSNN EMDASKLKKE FPELLSIKES LIKNVFEPNR KTSA

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.