Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- endoplasmic reticulum 2
- golgi 3
- extracellular 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g092330.1.1 | Tomato | nucleus | 97.77 | 96.9 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 84.6 | 83.48 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 83.71 | 83.15 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 78.35 | 80.88 |
| KRH31569 | Soybean | mitochondrion | 79.02 | 76.62 |
| KRG97348 | Soybean | endoplasmic reticulum | 74.78 | 76.31 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 70.76 | 76.2 |
| CDX77481 | Canola | endoplasmic reticulum | 76.79 | 75.94 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 76.79 | 75.77 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 77.68 | 75.65 |
| CDX85133 | Canola | endoplasmic reticulum | 76.79 | 75.44 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 77.23 | 75.22 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 77.23 | 75.22 |
| CDY64583 | Canola | endoplasmic reticulum | 77.01 | 75.0 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 76.12 | 74.78 |
| CDX92990 | Canola | endoplasmic reticulum | 76.12 | 74.78 |
| CDY53207 | Canola | endoplasmic reticulum | 75.89 | 74.73 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 67.41 | 68.17 |
| PGSC0003DMT400059215 | Potato | plastid | 33.93 | 68.16 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 66.96 | 67.72 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 66.96 | 67.57 |
| PGSC0003DMT400059216 | Potato | cytosol | 22.54 | 67.33 |
| PGSC0003DMT400066897 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 62.95 | 65.43 |
| PGSC0003DMT400024810 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 62.72 | 64.6 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 70.98 | 64.5 |
| PGSC0003DMT400018060 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 62.28 | 64.14 |
| PGSC0003DMT400020223 | Potato | endoplasmic reticulum | 61.16 | 63.57 |
| PGSC0003DMT400029181 | Potato | cytosol, golgi, peroxisome | 60.04 | 63.29 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 67.41 | 62.27 |
| PGSC0003DMT400010106 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 60.27 | 60.54 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 64.06 | 58.93 |
| Zm00001d049804_P001 | Maize | plasma membrane | 58.93 | 58.93 |
| Os08t0526100-01 | Rice | plastid | 62.72 | 58.79 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 62.72 | 58.79 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 64.51 | 58.5 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 62.72 | 58.42 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 62.72 | 58.3 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 58.48 | 58.22 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 62.05 | 58.04 |
| TraesCS7D01G257800.1 | Wheat | plastid | 63.39 | 57.96 |
| HORVU7Hr1G053260.2 | Barley | plastid | 63.39 | 57.96 |
| TraesCS7B01G153900.1 | Wheat | plastid | 63.62 | 57.93 |
| TraesCS7A01G256600.1 | Wheat | plastid | 63.17 | 57.76 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 63.39 | 57.03 |
| HORVU5Hr1G075660.1 | Barley | plastid | 63.17 | 55.71 |
| PGSC0003DMT400012829 | Potato | cytosol, extracellular, golgi | 21.65 | 27.87 |
| PGSC0003DMT400007898 | Potato | cytosol | 21.43 | 27.35 |
| PGSC0003DMT400031994 | Potato | golgi | 20.76 | 26.5 |
| PGSC0003DMT400080637 | Potato | golgi | 20.98 | 23.5 |
| PGSC0003DMT400041159 | Potato | golgi, mitochondrion | 19.87 | 22.94 |
| PGSC0003DMT400054459 | Potato | mitochondrion | 20.31 | 21.82 |
| PGSC0003DMT400075973 | Potato | cytosol, mitochondrion, peroxisome | 20.76 | 14.22 |
| PGSC0003DMT400018192 | Potato | cytosol, mitochondrion, plastid | 20.98 | 13.95 |
| PGSC0003DMT400054754 | Potato | cytosol, mitochondrion, plastid | 20.76 | 13.8 |
| PGSC0003DMT400058533 | Potato | cytosol | 3.35 | 4.98 |
Protein Annotations
| EntrezGene:102603120 | MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016857 | UniProt:M1BUC2 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF16363 |
| EnsemblPlantsGene:PGSC0003DMG400020589 | PGSC:PGSC0003DMG400020589 | EnsemblPlants:PGSC0003DMT400053071 | PRINTS:PR01713 | PANTHER:PTHR43574 | PANTHER:PTHR43574:SF10 |
| SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI000296C0D3 | RefSeq:XP_006360928.1 | SEG:seg | : |
Description
NAD dependent epimerase [Source:PGSC_GENE;Acc:PGSC0003DMG400020589]
Coordinates
chr9:-:59585684..59587468
Molecular Weight (calculated)
49604.5 Da
IEP (calculated)
10.129
GRAVY (calculated)
-0.230
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPDTSKT TKLERYNSYI RKVNSTKLIA ASSKLLFRVT LLVALLLIFF FTINYPPLTS EKTFNNNIHT TTHNLLSSTI YGGGASWEKQ VRHSSTPHRP
101: NGLSVLVTGA AGFVGSHCSL ALKKRGDGVL GLDNFNSYYD PSLKRARQDQ LTKHQIFIVE GDINDTELLK KLFDIVPFTH ILHLAAQAGV RYAMQNPLSY
201: VNSNVAGFVN LLEIAKAADP QPAIVWASSS SVYGLNTKVP FSEDHRTDQP ASLYAATKKA GEAIAHTYNH IYGLSLTGLR FFTVYGPWGR PDMAYFFFTK
301: DMIQGKSINV YVTQDDREVA RDFTYIDDIV KGCVGALDTA EKSTGSGGKK RGPAQLRVYN LGNTSPVSVK KLVAILENLL NLKAKKNVIK MPRNGDVPFT
401: HANVSLALRD FGYKPTTDLS SGLRKFVKWY VSYYGIQPRV KKANEGEK
101: NGLSVLVTGA AGFVGSHCSL ALKKRGDGVL GLDNFNSYYD PSLKRARQDQ LTKHQIFIVE GDINDTELLK KLFDIVPFTH ILHLAAQAGV RYAMQNPLSY
201: VNSNVAGFVN LLEIAKAADP QPAIVWASSS SVYGLNTKVP FSEDHRTDQP ASLYAATKKA GEAIAHTYNH IYGLSLTGLR FFTVYGPWGR PDMAYFFFTK
301: DMIQGKSINV YVTQDDREVA RDFTYIDDIV KGCVGALDTA EKSTGSGGKK RGPAQLRVYN LGNTSPVSVK KLVAILENLL NLKAKKNVIK MPRNGDVPFT
401: HANVSLALRD FGYKPTTDLS SGLRKFVKWY VSYYGIQPRV KKANEGEK
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.