Factsheet for TraesCS7B01G153900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23820.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT3G23820.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT3G23820.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G257800.1	Wheat	plastid	98.37	98.78
TraesCS7A01G256600.1	Wheat	plastid	97.56	97.96
HORVU7Hr1G053260.2	Barley	plastid	94.31	94.69
EES14210	Sorghum	cytosol, extracellular, golgi, plastid	82.11	84.34
Zm00001d049804_P001	Maize	plasma membrane	76.02	83.48
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	75.2	82.22
TraesCS5B01G280700.1	Wheat	endoplasmic reticulum	78.46	80.75
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	61.79	68.62
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	61.38	68.17
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	61.38	68.02
KRH58854	Soybean	endoplasmic reticulum, golgi	54.88	64.9
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	58.54	63.86
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	57.93	63.62
Solyc09g092330.1.1	Tomato	nucleus	58.33	63.5
CDX77481	Canola	endoplasmic reticulum	58.33	63.36
Bra014987.1-P	Field mustard	endoplasmic reticulum	58.33	63.22
CDX85133	Canola	endoplasmic reticulum	58.33	62.94
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	55.08	62.44
KRG97348	Soybean	endoplasmic reticulum	55.69	62.41
CDY64583	Canola	endoplasmic reticulum	58.33	62.39
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	58.33	62.39
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	57.72	62.28
AT3G23820.1	Thale cress	endoplasmic reticulum	58.13	62.17
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	58.13	62.17
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	61.18	62.06
CDX92990	Canola	endoplasmic reticulum	57.52	62.06
CDY53207	Canola	endoplasmic reticulum	57.32	61.98
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	56.91	61.67
TraesCS6B01G385900.1	Wheat	plastid	54.88	61.64
KRH31569	Soybean	mitochondrion	57.52	61.26
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	52.85	60.05
TraesCS7B01G056200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	52.85	58.69
TraesCS4B01G223700.1	Wheat	plastid	54.88	54.99
KRH42756	Soybean	extracellular, golgi, plastid	55.08	54.97
TraesCS5B01G315700.1	Wheat	cytosol	17.89	23.91
TraesCS1B01G478400.1	Wheat	endoplasmic reticulum, golgi	17.07	23.73
TraesCS5B01G181300.1	Wheat	plastid	17.68	23.2
TraesCS5B01G290300.1	Wheat	mitochondrion	19.11	22.33
TraesCS1B01G327200.1	Wheat	peroxisome	16.46	22.01
TraesCS2B01G482000.1	Wheat	golgi	17.89	21.36
TraesCS7B01G210700.2	Wheat	golgi	17.68	21.07
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	18.09	13.34
TraesCS4B01G205100.3	Wheat	mitochondrion	18.5	13.34
TraesCS6B01G267600.1	Wheat	peroxisome	3.05	5.0

Protein Annotations

EnsemblPlants:TraesCS7B01G153900.1	EnsemblPlantsGene:TraesCS7B01G153900	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	GO:GO:0050662
InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PANTHER:PTHR43574	PANTHER:PTHR43574:SF7	PFAM:PF01370
PRINTS:PR01713	SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	MapMan:3.13.4.1	:

Description

No Description!

Coordinates

chr7B:-:204685855..204687333

Molecular Weight (calculated)

52192.5 Da

IEP (calculated)

10.740

GRAVY (calculated)

-0.053

Length

492 amino acids

Sequence
(BLAST)

001: MPHPSSSSSS ASVDAAAKGV KLERYASGGG ALLMRRAGSS KIVAASSHLL FRATVLATLA LVCLFAVHYP SLLSRSFRLS AAAAASSSSS PPRQTSRHRN
101: LLGSSSAYAG AAWEREVRRS ATPRRDGGMS VLVTGAAGFV GAHCALALRA RGDGVLGLDN FNAYYEPGLK RARQRLLASR GVVVLGADIN DAALLERLFA
201: AVPFTHVLHL AAQAGVRYAM RAPQTYVASN VAGLVSVFEA AARHADPQPA IVWASSSSVY GLNTDAPFSE DHRTDRPASL YAATKKAGEA IAHAYNHIYG
301: LSITGLRFFT VYGPWGRPDM AYFSFARSIV AGEPITLFRA ADGTDVRRDF TYIDDVVKGC LGALDTAGKS TGSKSGKKRG PAPLRVYNLG NTSPVPVTRM
401: VAILEKLLGK KANKRVVTMP SNGDVPFTHA NVSHAARDFG YHPTTSLDAG LRKFVEWFLQ YYKIDPAKLA KGSRVGTKTT KKKSMGAISA AS

Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)

001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA

Arabidopsis Description

GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.