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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
TargetP:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G23820.1 HORVU4Hr1G019530.1 AT4G09570.1 19130088
AT3G23820.1 HORVU5Hr1G032550.3 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G257800.1 Wheat plastid 94.69 94.69
TraesCS7B01G153900.1 Wheat plastid 94.69 94.31
TraesCS7A01G256600.1 Wheat plastid 94.08 94.08
EES14210 Sorghum cytosol, extracellular, golgi, plastid 79.59 81.42
Zm00001d049804_P001 Maize plasma membrane 73.88 80.8
Zm00001d031577_P001 Maize cytosol, endoplasmic reticulum, peroxisome, plastid 73.47 80.0
HORVU5Hr1G075660.1 Barley plastid 76.33 73.62
GSMUA_Achr8P00950_001 Banana cytosol, endoplasmic reticulum, golgi 60.61 67.04
GSMUA_Achr8P08790_001 Banana endoplasmic reticulum, nucleus, peroxisome 60.2 66.44
GSMUA_AchrUn_... Banana endoplasmic reticulum 59.8 66.14
KRH58854 Soybean endoplasmic reticulum, golgi 54.49 64.18
PGSC0003DMT400053071 Potato cytosol, endoplasmic reticulum, golgi, plastid 57.96 63.39
Solyc09g092330.1.1 Tomato nucleus 58.37 63.27
VIT_05s0029g00420.t01 Wine grape endoplasmic reticulum 57.96 62.97
CDX77481 Canola endoplasmic reticulum 57.96 62.69
Bra014987.1-P Field mustard endoplasmic reticulum 57.96 62.56
CDX85133 Canola endoplasmic reticulum 57.96 62.28
PGSC0003DMT400040718 Potato cytosol, endoplasmic reticulum, golgi 54.9 61.98
KRG97348 Soybean endoplasmic reticulum 55.31 61.73
CDY64583 Canola endoplasmic reticulum 57.76 61.52
Bra028348.1-P Field mustard endoplasmic reticulum, golgi, nucleus 57.76 61.52
Bra001923.1-P Field mustard cytosol, endoplasmic reticulum, golgi 57.14 61.4
CDY18087 Canola cytosol, endoplasmic reticulum, golgi 57.55 61.3
PGSC0003DMT400011867 Potato cytosol, endoplasmic reticulum, golgi 56.73 61.23
CDX92990 Canola endoplasmic reticulum 56.94 61.18
CDY53207 Canola endoplasmic reticulum 56.73 61.1
AT3G23820.1 Thale cress endoplasmic reticulum 57.35 61.09
KRH31569 Soybean mitochondrion 57.14 60.61
GSMUA_Achr7P02740_001 Banana endoplasmic reticulum 58.98 59.59
Solyc05g053790.1.1 Tomato cytosol, endoplasmic reticulum, golgi 52.65 59.58
HORVU5Hr1G060660.3 Barley mitochondrion 47.55 59.29
HORVU7Hr1G031270.1 Barley endoplasmic reticulum 52.24 57.79
KRH42756 Soybean extracellular, golgi, plastid 54.69 54.36
HORVU4Hr1G063010.1 Barley peroxisome 54.49 51.95
HORVU5Hr1G055920.8 Barley plastid 17.14 22.46
HORVU5Hr1G077110.3 Barley mitochondrion 18.78 21.85
HORVU2Hr1G104110.1 Barley mitochondrion, plastid 17.96 21.36
HORVU5Hr1G080860.10 Barley mitochondrion 18.16 20.99
HORVU7Hr1G074300.2 Barley golgi 17.35 20.99
HORVU1Hr1G095430.8 Barley cytosol, nucleus 13.47 17.51
HORVU4Hr1G059120.2 Barley plastid 18.78 12.72
HORVU5Hr1G007050.2 Barley plastid 18.16 12.28
HORVU6Hr1G065690.1 Barley peroxisome, plastid 3.47 5.33
Protein Annotations
MapMan:3.13.4.1Gene3D:3.40.50.720Gene3D:3.90.25.10UniProt:A0A287WIE1InterPro:Epimerase_deHydtaseGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016020GO:GO:0016021GO:GO:0016857GO:GO:0050662EnsemblPlantsGene:HORVU7Hr1G053260EnsemblPlants:HORVU7Hr1G053260.2
InterPro:NAD(P)-bd_dom_sfInterPro:Nuc_sugar_epimPFAM:PF01370PRINTS:PR01713PANTHER:PTHR43574PANTHER:PTHR43574:SF7
SUPFAM:SSF51735TMHMM:TMhelixUniParc:UPI000B46D51BSEG:seg::
Description
No Description!
Coordinates
chrchr7H:+:207564676..207567014
Molecular Weight (calculated)
50976.0 Da
IEP (calculated)
10.741
GRAVY (calculated)
-0.065
Length
490 amino acids
Sequence
(BLAST)
001: MPHPSSSSSS SANVDAAAKG VKLERYASGG GALLMRRAGS SKIVAASSHL LFRATVLATL ALVCLFAVHY PTLLSRSFRL SAASSPPRPT SRHRNLLGSS
101: SAYAGAAWER EVRRSATPRR DGGMSVLVTG AAGFVGAHCA LALRARGDGV LGLDNFNAYY EPALKRARQR LLASRGVVVL GADINDAALL ERLFAAVPFT
201: HVLHLAAQAG VRYAMRAPQA YVASNVAGLV SVFEAAARHA DPQPAIVWAS SSSVYGLNTD APFSEDHRTD RPASLYAATK KAGEAISHAY NHIYGLSITG
301: LRFFTVYGPW GRPDMAYFSF ARSIVAGXXX XXXXXADGSE VRRDFTYIDD VVKGCLGALD TAGKSTGSKS GKKRGPAPLR VYNLGNTSPV AVTRMVAILE
401: KLLGKKANKR VVTMPSNGDV PFTHANVSHA ARDFGYHPTT SLDAGLRKFV EWFLQYYKID PAKLAKGSRA GTGGGKTSKK KSVGAMSAAS
Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.