Factsheet for HORVU5Hr1G055920.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G055920.8
HORVU5Hr1G080860.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	HORVU5Hr1G080860.10	AT1G12780.1	21798944
AT4G23920.1	HORVU5Hr1G055920.8	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G181300.1	Wheat	plastid	98.93	98.67
TraesCS5A01G183100.1	Wheat	plastid	98.93	98.67
TraesCS5D01G188200.1	Wheat	plastid	98.66	98.4
Os09t0323000-01	Rice	cytosol	83.42	84.55
EER98731	Sorghum	plastid	81.55	83.33
Zm00001d005598_P001	Maize	plastid	81.02	83.01
Zm00001d020093_P002	Maize	golgi	63.37	78.48
GSMUA_Achr4P02670_001	Banana	golgi	71.66	76.79
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	70.32	75.36
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	70.05	75.07
GSMUA_Achr5P09200_001	Banana	golgi	70.59	74.37
AT4G10960.1	Thale cress	golgi	68.45	72.93
AT4G23920.1	Thale cress	cytosol	68.18	72.86
Bra019257.1-P	Field mustard	plastid	67.65	72.7
CDY40862	Canola	cytosol, golgi	67.38	72.62
CDX86828	Canola	golgi	67.11	72.33
Bra035262.1-P	Field mustard	golgi	67.11	72.33
CDY47611	Canola	golgi	67.11	72.13
CDY03506	Canola	cytosol, golgi	66.84	71.84
Bra013744.1-P	Field mustard	cytosol, golgi	66.84	71.84
CDY50431	Canola	cytosol	66.04	70.98
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	66.04	70.98
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	66.04	70.98
CDY47846	Canola	golgi	64.44	70.26
Bra027732.1-P	Field mustard	golgi	64.44	70.26
AT1G64440.1	Thale cress	cytosol, golgi	65.24	70.11
CDY08378	Canola	golgi	64.17	69.57
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	69.52	61.32
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	68.72	59.35
HORVU1Hr1G095430.8	Barley	cytosol, nucleus	55.35	54.91
HORVU5Hr1G080860.10	Barley	mitochondrion	57.75	50.94
GSMUA_Achr9P06140_001	Banana	plastid	69.79	50.1
GSMUA_Achr6P26620_001	Banana	plastid	70.59	49.16
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	39.3	35.68
HORVU5Hr1G077110.3	Barley	mitochondrion	39.57	35.15
HORVU7Hr1G074300.2	Barley	golgi	37.43	34.57
HORVU5Hr1G060660.3	Barley	mitochondrion	23.26	22.14
HORVU7Hr1G031270.1	Barley	endoplasmic reticulum	23.26	19.64
HORVU4Hr1G063010.1	Barley	peroxisome	24.06	17.51
HORVU7Hr1G053260.2	Barley	plastid	22.46	17.14
HORVU5Hr1G075660.1	Barley	plastid	22.19	16.34
HORVU4Hr1G059120.2	Barley	plastid	22.99	11.89
HORVU5Hr1G007050.2	Barley	plastid	22.46	11.59
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	2.94	3.45

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	UniProt:A0A287RAM2
GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150
GO:GO:0008152	GO:GO:0016853	EnsemblPlantsGene:HORVU5Hr1G055920	EnsemblPlants:HORVU5Hr1G055920.8	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF1	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	InterPro:UDP_G4E
UniParc:UPI000B4728E5	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:437938459..437945041

Molecular Weight (calculated)

40374.8 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.242

Length

374 amino acids

Sequence
(BLAST)

001: MAVNGAANGS SGANGSSGPT RTVLVTGGAG YIGSHAVLQL LAAGFRAVVV DSLENSSELA VRRVAALAGE HARNLSFHKV DIRDEDALDA VFASTRFDAV
101: IHFAGLKAVG ESVQKPLFYY DHNIAGTINL LKVMAAHECK KLVFSSSAAV YGSPKNSPCT EEFPLLPHNP YGRTKLMAEE ICRDIYRSDS EWRIILLRYF
201: NPVGAHPSGY LGEDPRGVPN NLMPFVQQVA VGRRPSVTIF GNNYATKDGT GVRDYIHVLD LAEGHIAALR KLFDSSSNIG CEPYNLGTGK GTSVLEIVNA
301: FEKASGKKIP LVVGQRRPGD AEILFAGTGK AERELNWKAK YGITEMCRDQ WNWASKNPYG YGSPDSTKQN GNSH

Best Arabidopsis Sequence Match ( AT1G12780.1 )
(BLAST)

001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L

Arabidopsis Description

UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.