Factsheet for Zm00001d005598_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005598_P001
Zm00001d020093_P002
Zm00001d021249_P003
Zm00001d032346_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	Zm00001d021249_P003	AT1G12780.1	21798944
AT4G23920.1	Zm00001d005598_P001	AT4G10960.1	21798944
AT4G23920.1	Zm00001d020093_P002	AT4G10960.1	21798944
AT4G23920.1	Zm00001d032346_P002	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98731	Sorghum	plastid	96.99	96.72
Zm00001d020093_P002	Maize	golgi	73.97	89.4
Os09t0323000-01	Rice	cytosol	83.01	82.11
HORVU5Hr1G055920.8	Barley	plastid	83.01	81.02
TraesCS5D01G188200.1	Wheat	plastid	82.74	80.53
TraesCS5B01G181300.1	Wheat	plastid	82.47	80.27
TraesCS5A01G183100.1	Wheat	plastid	82.47	80.27
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	70.14	73.35
GSMUA_Achr4P02670_001	Banana	golgi	69.32	72.49
Zm00001d029151_P002	Maize	extracellular, golgi	70.14	72.11
AT4G10960.1	Thale cress	golgi	69.04	71.79
GSMUA_Achr5P09200_001	Banana	golgi	69.32	71.27
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	67.95	71.06
Bra035262.1-P	Field mustard	golgi	66.85	70.32
CDX86828	Canola	golgi	66.85	70.32
Bra019257.1-P	Field mustard	plastid	66.85	70.11
CDY40862	Canola	cytosol, golgi	66.58	70.03
AT4G23920.1	Thale cress	cytosol	67.12	70.0
CDY50431	Canola	cytosol	66.3	69.54
CDY47611	Canola	golgi	66.3	69.54
CDY03506	Canola	cytosol, golgi	66.3	69.54
Bra013744.1-P	Field mustard	cytosol, golgi	66.03	69.25
CDY47846	Canola	golgi	64.66	68.8
Bra027732.1-P	Field mustard	golgi	64.66	68.8
AT1G64440.1	Thale cress	cytosol, golgi	65.48	68.68
CDY08378	Canola	golgi	64.66	68.41
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	64.66	67.82
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	64.66	67.82
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	77.81	67.14
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	70.41	60.61
Zm00001d021249_P003	Maize	cytosol	59.18	59.5
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	69.32	58.43
GSMUA_Achr9P06140_001	Banana	plastid	70.14	49.14
GSMUA_Achr6P26620_001	Banana	plastid	70.68	48.04
Zm00001d028825_P001	Maize	golgi, mitochondrion	37.53	32.46
Zm00001d047683_P003	Maize	mitochondrion	37.53	32.31
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	39.18	28.32
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	33.7	27.03
Zm00001d014509_P001	Maize	cytosol	18.08	23.0
Zm00001d045078_P001	Maize	extracellular, golgi	24.93	22.03
Zm00001d018350_P001	Maize	plasma membrane	25.21	20.96
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	25.75	20.89
Zm00001d037087_P001	Maize	endoplasmic reticulum	24.11	20.0
Zm00001d047915_P001	Maize	plastid	25.75	19.62
Zm00001d034293_P001	Maize	plastid	11.78	19.46
Zm00001d049804_P001	Maize	plasma membrane	23.84	19.42
Zm00001d028427_P001	Maize	plastid	25.21	19.21
Zm00001d021026_P001	Maize	endoplasmic reticulum	24.93	18.69
Zm00001d017999_P002	Maize	mitochondrion	15.34	18.01
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	16.99	17.92
Zm00001d037310_P001	Maize	plastid	12.05	14.47
Zm00001d028654_P002	Maize	cytosol	24.11	13.1
Zm00001d038116_P001	Maize	plastid	11.23	12.65
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	23.29	12.65
Zm00001d017794_P001	Maize	plastid	12.6	12.33
Zm00001d037784_P002	Maize	endoplasmic reticulum	22.47	11.78
Zm00001d017601_P001	Maize	extracellular, peroxisome	2.74	3.26

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	EntrezGene:100303816	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10
UniProt:B4FYI0	EMBL:BT042168	GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005975
GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
ProteinID:ONM21543.1	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF1	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
InterPro:UDP_G4E	UniParc:UPI00017B7D14	EnsemblPlantsGene:Zm00001d005598	EnsemblPlants:Zm00001d005598_P001	EnsemblPlants:Zm00001d005598_T001	:

Description

UDP-glucose 4-epimerase 4

Coordinates

chr2:-:180222268..180234088

Molecular Weight (calculated)

39699.5 Da

IEP (calculated)

8.723

GRAVY (calculated)

-0.164

Length

365 amino acids

Sequence
(BLAST)

001: MSAAKEAGPS SRAVLVTGGA GYIGSHAVLQ LLTAGFRVVV VDSLANSSEL VIRRLRSLAG EHAKNLAFHK VDIRDTDGLK KVFASTRFDA VIHFAGLKAV
101: GESVQKPLLY YDHNVVGTIN LLEVMAAHGC KKLVFSSSAA VYGSPNNPPC TEDFPLTPHN PYGRTKLMVE EICRDIYHSD PEWNIILLRY FNPVGAHPSG
201: YLGEDPCGTP NNLMPFVQQI AVGRRPSLTI FGNNYATKDG TGVRDYIHVV DLAEGHLFAL KKLFESSSNI GCEAYNLGTG KGTSVLEIVN AFEKASGKKI
301: PLVMGQRRPG DAEVLFSSPA KAERELHWKA KYGITEMCRD LWNWASKSPY GYAASESPKL NGSSR

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.