Factsheet for Zm00001d037310_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038116_P001	Maize	plastid	84.21	79.01
Zm00001d017794_P001	Maize	plastid	93.75	76.41
Zm00001d034293_P001	Maize	plastid	45.39	62.44
Zm00001d045078_P001	Maize	extracellular, golgi	44.74	32.93
Zm00001d037087_P001	Maize	endoplasmic reticulum	45.72	31.59
Zm00001d018350_P001	Maize	plasma membrane	43.75	30.3
Zm00001d049804_P001	Maize	plasma membrane	37.5	25.45
Zm00001d021026_P001	Maize	endoplasmic reticulum	38.82	24.23
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	34.87	23.56
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	35.2	23.16
Zm00001d047915_P001	Maize	plastid	36.18	22.96
Zm00001d028427_P001	Maize	plastid	35.86	22.76
Zm00001d005598_P001	Maize	plastid	14.47	12.05
Zm00001d029151_P002	Maize	extracellular, golgi	13.82	11.83
Zm00001d021249_P003	Maize	cytosol	13.16	11.02
Zm00001d020093_P002	Maize	golgi	10.86	10.93
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	13.82	9.93
Zm00001d047683_P003	Maize	mitochondrion	11.18	8.02
Zm00001d028825_P001	Maize	golgi, mitochondrion	10.2	7.35
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	11.18	6.73
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	14.8	6.7
Zm00001d028654_P002	Maize	cytosol	14.8	6.7
Zm00001d037784_P002	Maize	endoplasmic reticulum	13.49	5.89
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	5.59	4.91
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	6.91	4.62
Zm00001d017999_P002	Maize	mitochondrion	4.28	4.18
Zm00001d014509_P001	Maize	cytosol	2.3	2.44
Zm00001d017601_P001	Maize	extracellular, peroxisome	0.33	0.33

Protein Annotations

EnsemblPlants:Zm00001d037310_P001	EnsemblPlants:Zm00001d037310_T001	EnsemblPlantsGene:Zm00001d037310	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR43574	PANTHER:PTHR43574:SF17	PFAM:PF16363	ProteinID:AQK83536.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI000844D105	UniProt:A0A1D6LWB6	MapMan:3.13.4.1	:	:	:

Description

UDP-glucuronate 4-epimerase 1

Coordinates

chr6:-:120276986..120278337

Molecular Weight (calculated)

32143.3 Da

IEP (calculated)

11.161

GRAVY (calculated)

-0.134

Length

304 amino acids

Sequence
(BLAST)

001: MAARQERLVS TAFLSRAPIS STVPTRRTSS DDLVAAAFAS PAALTSNSSA SLAASILASR PLPPCFTRAS DAVEAAASAA RPVATRFLFE SSMPSEAKIK
101: ASTLVAASMP STPVSSALLQ RTDATVSATR PAPGIDSFNS YYDPSLKKAR RALLGSHGVF VVEGDINDGR LLAKLFDVVP FTHVLHLAAQ AGVRYAMENP
201: AAYVHSNVAG LVSLLEACKD ADPQPAVVWA SSSFVYSLND RVPFSGLRGR GHRGRSQGHG AGDPGPPHPP PSPIRHQHRS RRWKARLSQS SVTGNLMAMP
301: KKLR

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.