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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d005029_P001
Zm00001d017601_P001
Zm00001d028654_P002
Zm00001d047796_P003
Zm00001d052380_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G78570.1 Zm00001d017601_P001 AT1G63000.1 21798944
AT1G78570.1 Zm00001d028654_P002 AT1G78570.1 21798944
AT1G78570.1 Zm00001d047796_P003 AT1G78570.1 21798944
AT1G78570.1 Zm00001d005029_P001 AT3G54220.1 19228333
AT1G78570.1 Zm00001d052380_P001 AT3G54220.1 19228333
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER95078 Sorghum cytosol, mitochondrion, peroxisome 96.73 96.73
Zm00001d047796_P003 Maize extracellular, nucleus, plasma membrane 94.49 94.49
Os03t0278200-01 Rice nucleus, plasma membrane 93.45 93.04
TraesCS4A01G099200.1 Wheat cytosol 91.82 91.41
TraesCS4D01G206000.1 Wheat mitochondrion 91.82 90.47
TraesCS4B01G205100.3 Wheat mitochondrion 91.67 90.32
HORVU4Hr1G059120.2 Barley plastid 91.52 85.06
AT1G78570.1 Thale cress cytosol, mitochondrion, peroxisome 83.48 83.86
GSMUA_Achr10P... Banana cytosol, mitochondrion, plastid 79.17 83.65
CDX97601 Canola cytosol, mitochondrion, plastid 79.76 82.97
Bra027310.1-P Field mustard cytosol, mitochondrion, peroxisome 81.99 82.86
CDX98494 Canola cytosol, mitochondrion, plastid 79.61 82.82
CDY32340 Canola cytosol, mitochondrion, peroxisome 79.17 82.74
Bra035048.1-P Field mustard cytosol, mitochondrion, plastid 82.44 82.69
CDY20084 Canola cytosol, mitochondrion, peroxisome 78.87 82.3
AT3G14790.2 Thale cress mitochondrion 81.4 82.01
Bra021578.1-P Field mustard cytosol, mitochondrion, plastid 78.57 81.99
CDY40003 Canola cytosol, mitochondrion, plastid 81.25 81.49
CDY45116 Canola cytosol, mitochondrion, peroxisome 80.21 81.05
CDY24092 Canola cytosol, mitochondrion, peroxisome 80.21 81.05
CDY35137 Canola cytosol, mitochondrion, plastid 80.65 80.9
CDY60210 Canola cytosol, mitochondrion, peroxisome 80.36 80.84
Bra039675.1-P Field mustard cytosol, mitochondrion, peroxisome 79.91 80.75
Bra038127.1-P Field mustard cytosol, mitochondrion, peroxisome 80.21 80.69
AT1G53500.1 Thale cress cytosol, extracellular, peroxisome 79.91 80.51
Bra026009.1-P Field mustard cytosol, mitochondrion, plastid 80.51 80.51
CDY25850 Canola cytosol, mitochondrion, peroxisome 51.19 80.37
Zm00001d037784_P002 Maize endoplasmic reticulum 81.99 79.17
CDX88455 Canola cytosol, peroxisome, plastid 82.74 78.64
VIT_04s0069g00830.t01 Wine grape cytosol, mitochondrion, plastid 76.19 77.93
PGSC0003DMT400075973 Potato cytosol, mitochondrion, peroxisome 74.55 76.61
Solyc08g069110.2.1 Tomato unclear 73.81 76.19
KRH04933 Soybean cytosol, mitochondrion, plastid 71.58 74.69
Zm00001d017601_P001 Maize extracellular, peroxisome 34.08 74.59
KRH16155 Soybean cytosol 72.17 74.05
Zm00001d029151_P002 Maize extracellular, golgi 13.39 25.35
Zm00001d005598_P001 Maize plastid 13.1 24.11
Zm00001d021249_P003 Maize cytosol 12.65 23.42
Zm00001d020093_P002 Maize golgi 10.12 22.52
Zm00001d045078_P001 Maize extracellular, golgi 12.95 21.07
Zm00001d037087_P001 Maize endoplasmic reticulum 13.69 20.91
Zm00001d031577_P001 Maize cytosol, endoplasmic reticulum, peroxisome, plastid 13.99 20.89
Zm00001d032346_P002 Maize endoplasmic reticulum, golgi, plastid 13.1 20.8
Zm00001d049804_P001 Maize plasma membrane 13.69 20.54
Zm00001d018350_P001 Maize plasma membrane 13.1 20.05
Zm00001d028825_P001 Maize golgi, mitochondrion 12.5 19.91
Zm00001d047683_P003 Maize mitochondrion 12.35 19.58
Zm00001d021026_P001 Maize endoplasmic reticulum 13.69 18.89
Zm00001d047915_P001 Maize plastid 13.39 18.79
Zm00001d028427_P001 Maize plastid 13.1 18.37
Zm00001d034293_P001 Maize plastid 5.65 17.19
Zm00001d026311_P001 Maize golgi, mitochondrion, plastid 12.65 16.83
Zm00001d002292_P004 Maize endoplasmic reticulum, golgi 10.42 15.38
Zm00001d037310_P001 Maize plastid 6.7 14.8
Zm00001d014509_P001 Maize cytosol 5.95 13.94
Zm00001d038116_P001 Maize plastid 5.95 12.35
Zm00001d010657_P001 Maize golgi, plastid, vacuole 6.25 12.14
Zm00001d017794_P001 Maize plastid 6.55 11.8
Zm00001d017999_P002 Maize mitochondrion 5.36 11.58
Protein Annotations
EnsemblPlants:Zm00001d028654_P002EnsemblPlants:Zm00001d028654_T002EnsemblPlantsGene:Zm00001d028654Gene3D:3.40.50.720Gene3D:3.90.25.10InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sfInterPro:RmlD-like-bdPANTHER:PTHR43000PANTHER:PTHR43000:SF8PFAM:PF04321PFAM:PF16363
ProteinID:ONL96644.1ProteinID:ONL96645.1ProteinID:ONL96646.1SEG:segSUPFAM:SSF51735UniParc:UPI000221FB41
UniProt:A0A096QI23MapMan:3.13.6.1::::
Description
Trifunctional UDP-glucose 46-dehydratase/UDP-4-keto-6-deoxy-D-glucose 35-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2
Coordinates
chr1:+:41844935..41848759
Molecular Weight (calculated)
75941.9 Da
IEP (calculated)
7.379
GRAVY (calculated)
-0.349
Length
672 amino acids
Sequence
(BLAST)
001: MATYEPKNIL ITGAAGFIAS HVTNCLVRNY PHYKIVVLDK LDYCSSLKNL NPSRASPNLK FVKGDIASAD LVNHLLVTES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG LPLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTVKERRVID VAKDICRLFG LDTEKVIRFV ENRPFNDQRY FLDDQKLKRL
301: GWAERTPWEE GLKKTIEWYT TNPDYWGDVT GALLPHPRML MIPGVERHNW TEDIKSLTSS PAEASTTAPA TSAKRTTAAP QKPLYKFLIY GRTGWIGGLL
401: GKICDKQGIP YEYGKGRLEE RSQLLEDIRN VKPTQVFNAA GVTGRPNVDW CETHKQDTIR TNVVGILNLA DVCREQGLLM INYATGCIFE YDAKHPERSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKIARYD KVVNIPNSMT ILDELLPISI EMAKRDCRGI WNFTNPGVVS
601: HNEILEMYKK YINPDFKWTN FTLEEQSKVI VAPRSNNEMD ASKLKAEFSQ LMSIKDSLIK YVFEPNRKVP AN
Best Arabidopsis Sequence Match ( AT1G53500.1 )
(BLAST)
001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
Arabidopsis Description
RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [peroxisome,extracellular,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.