Factsheet for Bra027310.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98494	Canola	cytosol, mitochondrion, plastid	96.84	99.69
CDX97601	Canola	cytosol, mitochondrion, plastid	96.69	99.54
AT3G14790.2	Thale cress	mitochondrion	95.49	95.2
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	92.03	95.03
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	92.18	91.77
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	90.98	90.98
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	85.11	87.21
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	87.07	86.42
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	85.86	84.97
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	84.66	83.78
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	80.0	83.65
Os03t0278200-01	Rice	nucleus, plasma membrane	84.81	83.56
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	77.74	83.25
EER95086	Sorghum	cytosol, mitochondrion, plastid	84.06	83.18
TraesCS4A01G099200.1	Wheat	cytosol	84.21	82.96
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	83.61	82.74
TraesCS4D01G206000.1	Wheat	mitochondrion	84.21	82.11
Zm00001d028654_P002	Maize	cytosol	82.86	81.99
TraesCS4B01G205100.3	Wheat	mitochondrion	84.06	81.96
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	78.05	79.0
Bra027005.1-P	Field mustard	cytosol	35.19	78.79
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	76.54	77.83
Solyc08g069110.2.1	Tomato	unclear	75.94	77.57
HORVU4Hr1G059120.2	Barley	plastid	84.06	77.32
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	69.62	76.53
KRH04933	Soybean	cytosol, mitochondrion, plastid	73.68	76.09
KRH16155	Soybean	cytosol	74.89	76.03
Bra030933.1-P	Field mustard	cytosol	20.9	75.14
Bra019776.1-P	Field mustard	cytosol	35.79	74.14
Bra027732.1-P	Field mustard	golgi	13.53	26.24
Bra019257.1-P	Field mustard	plastid	13.23	25.29
Bra013744.1-P	Field mustard	cytosol, golgi	12.63	24.14
Bra016757.1-P	Field mustard	cytosol	12.63	23.93
Bra035262.1-P	Field mustard	golgi	12.48	23.92
Bra019785.1-P	Field mustard	cytosol	12.03	23.88
Bra027626.1-P	Field mustard	cytosol	12.33	23.36
Bra039253.1-P	Field mustard	cytosol	12.03	23.05
Bra020917.1-P	Field mustard	golgi, mitochondrion	13.98	22.63
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	14.44	22.07
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	14.14	21.91
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	14.14	21.86
Bra032409.1-P	Field mustard	mitochondrion	13.68	21.72
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.83	21.15
Bra033746.1-P	Field mustard	golgi	13.08	21.12
Bra027557.1-P	Field mustard	golgi	13.08	21.12
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.38	20.75
Bra014987.1-P	Field mustard	endoplasmic reticulum	14.14	20.7
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.23	20.47
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.98	20.39
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	13.98	20.22
Bra013466.1-P	Field mustard	mitochondrion	13.83	19.87
Bra005387.1-P	Field mustard	golgi, mitochondrion	13.38	19.6

Protein Annotations

EnsemblPlants:Bra027310.1	EnsemblPlants:Bra027310.1-P	EnsemblPlantsGene:Bra027310	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002547C00	UniProt:M4EEU8	MapMan:3.13.6.1	:

Description

AT3G14790 (E=0.0) RHM3, ATRHM3 | RHM3 (RHAMNOSE BIOSYNTHESIS 3); UDP-L-rhamnose synthase/ catalytic

Coordinates

chrA05:-:20259424..20261514

Molecular Weight (calculated)

74628.0 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.363

Length

665 amino acids

Sequence
(BLAST)

001: MATYKPKNIL ITGAAGFIAS HVANRLVRTY PDYKIVVLDK LDYCSNLKNL NPSKSSPNFK FVKGDIASAD LVNYLLITEN IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDASVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMSG KPLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVNHVYNI GTTKERRVID VANDISKLFG INPDSTIQFV ENRPFNDQRY FLDDQKLKKL
301: GWAERTTWEE GLKKTMEWYT ANPEWWGDVS GALLPHPRML MMPGDRLCDS GDEHKDADGN QTFTVVTPPK TGGSGDNKTS LKFLIYGKTG WLGGLLGKLC
401: EKQGIAYEYG KGRLEDRASL VADIRRVKPT HVFNAAGLTG RPNVDWCESH KTETIRVNVA GTLTLADVCR ENGLLMMNFA TGCIFEYDAA HPEGSGIGFK
501: EEDKPNFTGS FYSKTKAMVE ELLREFDNVC TLRVRMPISS DLNNPRNFIT KISRYNKVVN IPNSMTILDE LLPISIEMAK RNLRGIWNFT NPGVVSHNEI
601: LEMYKSYIEP GFKWSNFTLE EQAKVIVAPR SNNEMDGAKL SKEFPELLSI QDSLIKYVFE PNKRT

Best Arabidopsis Sequence Match ( AT3G14790.2 )
(BLAST)

001: MLQMATYKPK NILITGAAGF IASHVANRLV RSYPDYKIVV LDKLDYCSNL KNLNPSKSSP NFKFVKGDIA SADLVNYLLI TEEIDTIMHF AAQTHVDNSF
101: GNSFEFTKNN IYGTHVLLEA CKVTGQIRRF IHVSTDEVYG ETDEDASVGN HEASQLLPTN PYSATKAGAE MLVMAYGRSY GLPVITTRGN NVYGPNQFPE
201: KLIPKFILLA MNGKPLPIHG DGSNVRSYLY CEDVAEAFEV VLHKGEVNHV YNIGTTRERR VIDVANDISK LFGIDPDSTI QYVENRPFND QRYFLDDQKL
301: KKLGWCERTN WEEGLRKTME WYTENPEWWG DVSGALLPHP RMLMMPGDRH SDGSDEHKNA DGNQTFTVVT PTKAGCSGDK RSLKFLIYGK TGWLGGLLGK
401: LCEKQGIPYE YGKGRLEDRA SLIADIRSIK PSHVFNAAGL TGRPNVDWCE SHKTETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD AAHPEGSGIG
501: FKEEDKPNFT GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VNIPNSMTIL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKSYI EPDFKWSNFN LEEQAKVIVA PRSNNEMDGA KLSKEFPEML SIKDSLIKYV FEPNKRT

Arabidopsis Description

RHM3Rhamnose biosynthesis 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.