Factsheet for Bra039675.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 3
golgi 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24092	Canola	cytosol, mitochondrion, peroxisome	99.25	99.25
CDY45116	Canola	cytosol, mitochondrion, peroxisome	98.8	98.8
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	96.54	96.11
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	93.98	93.7
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	90.98	90.98
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	86.77	89.6
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	85.86	85.22
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	83.16	85.21
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	84.51	83.63
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	76.24	81.64
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	82.41	81.55
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	77.74	81.29
Os03t0278200-01	Rice	nucleus, plasma membrane	82.41	81.19
TraesCS4A01G099200.1	Wheat	cytosol	82.41	81.19
EER95086	Sorghum	cytosol, mitochondrion, plastid	81.95	81.1
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	81.5	80.65
TraesCS4D01G206000.1	Wheat	mitochondrion	82.41	80.35
TraesCS4B01G205100.3	Wheat	mitochondrion	82.26	80.21
Zm00001d028654_P002	Maize	cytosol	80.75	79.91
Bra027005.1-P	Field mustard	cytosol	34.74	77.78
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	76.54	77.47
Bra030933.1-P	Field mustard	cytosol	21.5	77.3
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	75.04	76.3
Solyc08g069110.2.1	Tomato	unclear	74.29	75.88
HORVU4Hr1G059120.2	Barley	plastid	82.26	75.66
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	67.82	74.55
KRH16155	Soybean	cytosol	73.38	74.5
KRH04933	Soybean	cytosol, mitochondrion, plastid	72.03	74.38
Bra019776.1-P	Field mustard	cytosol	35.64	73.83
Bra027732.1-P	Field mustard	golgi	13.08	25.36
Bra019257.1-P	Field mustard	plastid	12.93	24.71
Bra016757.1-P	Field mustard	cytosol	12.63	23.93
Bra019785.1-P	Field mustard	cytosol	12.03	23.88
Bra013744.1-P	Field mustard	cytosol, golgi	12.33	23.56
Bra035262.1-P	Field mustard	golgi	12.18	23.34
Bra027626.1-P	Field mustard	cytosol	12.18	23.08
Bra039253.1-P	Field mustard	cytosol	11.88	22.77
Bra020917.1-P	Field mustard	golgi, mitochondrion	13.68	22.14
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	14.14	21.61
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.83	21.45
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	13.83	21.4
Bra032409.1-P	Field mustard	mitochondrion	13.38	21.24
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.83	21.15
Bra033746.1-P	Field mustard	golgi	12.93	20.87
Bra027557.1-P	Field mustard	golgi	12.93	20.87
Bra014987.1-P	Field mustard	endoplasmic reticulum	13.98	20.48
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.08	20.28
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	13.08	20.23
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	13.83	20.18
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	13.83	20.0
Bra005387.1-P	Field mustard	golgi, mitochondrion	13.23	19.38
Bra013466.1-P	Field mustard	mitochondrion	13.38	19.22

Protein Annotations

EnsemblPlants:Bra039675.1	EnsemblPlants:Bra039675.1-P	EnsemblPlantsGene:Bra039675	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363
SUPFAM:SSF51735	UniParc:UPI000253E78D	UniProt:M4FF03	MapMan:3.13.6.1	:	:

Description

AT1G53500 (E=0.0) MUM4, RHM2, ATRHM2, ATMUM4 | MUM4 (MUCILAGE-MODIFIED 4); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic

Coordinates

chrA06:+:596458..598542

Molecular Weight (calculated)

75002.7 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.396

Length

665 amino acids

Sequence
(BLAST)

001: MATEYKPKNI LITGAAGFIA SHVANRLIRS YPDYKIVVLD KLDYCSDLKN LDPSFSSPNF RFVKGDIASD DLVNYLLITE NIDTIMHFAA QTHVDNSFGN
101: SFEFTKNNIY GTHVLLEACK VTGQIKRFIH VSTDEVYGET DEDAAVGNHE ASQLLPTNPY SATKAGAEML VMAYGRSYGL PVITTRGNNV YGPNQFPEKM
201: IPKFMLLAMS GKPLPIHGDG SNVRSYLYCE DVAEAFEVVL HKGEVGHVYN IGTKRERRVI DVARDICKLL GKDPEASIQF VENRPFNDQR YFLDDQKLKN
301: LGWCERTGWE DGLKKTMEWY TQNPEWWGDV SGALLPHPRM LMMPGGRVSD EKKDTSSNTV QTFTVVTPNN KTHDPKDKAS LKFLIYGKTG WIGGLLGKLC
401: EKQGITYEYG KGRLEDRASL MADIRSNKPT HVFNAAGLTG RPNVDWCESH KPETIRVNVA GTLTLADVCR ENGLLMMNFA TGCIFEYDAA HPEGSGIGFK
501: EEDNPNFTGS FYSKTKAMVE ELLREFDNVC TLRVRMPISS DLNNPRNFIT KISRYNKVVN IPNSMTILDE LLPISIEMAK RNLRGIWNFT NPGVVSHNEI
601: LEMYKSYIEP GFKWSNFTVE EQAKVIVAPR SKHEMDGAKL SKEFPEMLPI KEALIKYVFE PNKRT

Best Arabidopsis Sequence Match ( AT1G53500.1 )
(BLAST)

001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT

Arabidopsis Description

RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.