Factsheet for Bra019776.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
golgi 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98052	Canola	cytosol	96.26	95.67
CDY57072	Canola	cytosol, extracellular, peroxisome	95.02	94.43
Bra027005.1-P	Field mustard	cytosol	84.74	91.58
AT1G63000.1	Thale cress	cytosol	84.74	90.37
VIT_02s0025g04610.t01	Wine grape	cytosol	79.75	84.77
PGSC0003DMT400058533	Potato	cytosol	78.5	83.72
TraesCS6D01G238800.1	Wheat	peroxisome	78.19	83.67
TraesCS6A01G257500.1	Wheat	peroxisome	77.88	83.33
KRH77471	Soybean	cytosol, endoplasmic reticulum	71.96	83.09
TraesCS6B01G267600.1	Wheat	peroxisome	77.57	83.0
EES07456	Sorghum	cytosol, peroxisome, plastid	77.88	81.43
Solyc08g080140.2.1	Tomato	extracellular	76.32	81.4
GSMUA_Achr1P03840_001	Banana	cytosol	76.01	79.74
GSMUA_Achr5P10430_001	Banana	cytosol	75.39	79.08
Zm00001d017601_P001	Maize	extracellular, peroxisome	75.39	78.83
Os02t0678400-01	Rice	plasma membrane	76.01	78.46
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	77.88	78.37
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	73.52	36.65
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	75.39	36.12
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	75.39	36.01
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	74.14	35.79
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	74.45	35.78
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	73.83	35.64
Bra030933.1-P	Field mustard	cytosol	2.8	4.86
Bra014987.1-P	Field mustard	endoplasmic reticulum	5.92	4.19
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	5.3	3.91
Bra020917.1-P	Field mustard	golgi, mitochondrion	4.98	3.89
Bra027732.1-P	Field mustard	golgi	4.05	3.79
Bra019257.1-P	Field mustard	plastid	4.05	3.74
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	5.3	3.73
Bra027626.1-P	Field mustard	cytosol	4.05	3.7
Bra013466.1-P	Field mustard	mitochondrion	5.3	3.67
Bra033746.1-P	Field mustard	golgi	4.67	3.64
Bra019785.1-P	Field mustard	cytosol	3.74	3.58
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	4.67	3.5
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	4.67	3.49
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	4.98	3.48
Bra035262.1-P	Field mustard	golgi	3.74	3.46
Bra039253.1-P	Field mustard	cytosol	3.74	3.46
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	4.67	3.45
Bra013744.1-P	Field mustard	cytosol, golgi	3.74	3.45
Bra016757.1-P	Field mustard	cytosol	3.74	3.42
Bra027557.1-P	Field mustard	golgi	4.36	3.4
Bra032409.1-P	Field mustard	mitochondrion	4.05	3.1
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	4.05	3.03
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	4.05	3.02
Bra005387.1-P	Field mustard	golgi, mitochondrion	4.05	2.86

Protein Annotations

EnsemblPlants:Bra019776.1	EnsemblPlants:Bra019776.1-P	EnsemblPlantsGene:Bra019776	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd
PANTHER:PTHR10366	PANTHER:PTHR10366:SF405	PFAM:PF04321	SUPFAM:SSF51735	UniParc:UPI000253EC7F	UniProt:M4DTD3
MapMan:3.13.6.1	:	:	:	:	:

Description

AT1G63000 (E=4e-162) NRS/ER, UER1 | NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE); UDP-4-keto-6-deoxy-glucose-3,5-epimerase/ UDP-4-keto-rhamnose-4-keto-reductase/ dTDP-4-dehydrorhamnose 3,5-epimerase/ dTDP-4-dehydrorhamnose reductase

Coordinates

chrA06:-:4461145..4462245

Molecular Weight (calculated)

35914.9 Da

IEP (calculated)

6.169

GRAVY (calculated)

-0.282

Length

321 amino acids

Sequence
(BLAST)

001: MRDPTVSSYY SPVKSTITTE RMGAEANGSS SSLNFLIYGR TGWIGGILGK LCEAQGISYT YGSGRLEDRR SLVADLDSVK PSHVFNAAGV TGRPNVDWCE
101: SHKVETIRTN VVGTLTLADV CRERGLVLIN YATGCIFEYD SGHPLGSGLG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLSNPRNF
201: ITKITRYEKV VDIPNSMTIL DELLPISLEM AKRNLTGIWN FTNPGVVSHN EILEMYREFV DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPEML
301: SIKEALVKFV FEPNKKTEIK G

Best Arabidopsis Sequence Match ( AT1G63000.1 )
(BLAST)

001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A

Arabidopsis Description

NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.