CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 1
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57264	Soybean	endoplasmic reticulum	61.15	81.34
KRH03995	Soybean	plastid	83.45	76.82
VIT_02s0025g04610.t01	Wine grape	cytosol	83.45	76.82
CDY45471	Canola	cytosol	80.58	75.42
CDY45969	Canola	cytosol	80.58	75.42
Bra027005.1-P	Field mustard	cytosol	80.22	75.08
PGSC0003DMT400058533	Potato	cytosol	80.94	74.75
AT1G63000.1	Thale cress	cytosol	80.22	74.09
TraesCS6D01G238800.1	Wheat	peroxisome	79.5	73.67
TraesCS6B01G267600.1	Wheat	peroxisome	79.5	73.67
Solyc08g080140.2.1	Tomato	extracellular	79.5	73.42
TraesCS6A01G257500.1	Wheat	peroxisome	79.14	73.33
Bra019776.1-P	Field mustard	cytosol	83.09	71.96
GSMUA_Achr1P03840_001	Banana	cytosol	78.78	71.57
CDY57072	Canola	cytosol, extracellular, peroxisome	83.09	71.52
CDX98052	Canola	cytosol	82.73	71.21
EES07456	Sorghum	cytosol, peroxisome, plastid	78.42	71.01
Os02t0678400-01	Rice	plasma membrane	79.14	70.74
GSMUA_Achr5P10430_001	Banana	cytosol	77.7	70.59
Zm00001d017601_P001	Maize	extracellular, peroxisome	77.34	70.03
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	78.78	68.65
KRH57441	Soybean	cytosol	59.71	53.38
KRH13001	Soybean	cytosol, mitochondrion, plastid	77.34	32.19
KRH43408	Soybean	nucleus	76.98	32.04
KRH21867	Soybean	cytosol, mitochondrion, plastid	76.98	31.99
KRH04933	Soybean	cytosol, mitochondrion, plastid	73.74	31.83
KRH27429	Soybean	cytosol, mitochondrion, plastid	76.26	31.69
KRH16155	Soybean	cytosol	74.46	31.6
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	57.19	24.09
KRH46062	Soybean	cytosol	49.28	22.39
KRH26241	Soybean	cytosol	3.96	20.75
KRG99450	Soybean	cytosol, mitochondrion, nucleus	3.96	15.94
KRH00406	Soybean	cytosol, mitochondrion, nucleus	3.96	15.94
KRH11871	Soybean	golgi, plastid	5.76	3.86
KRH41129	Soybean	nucleus	4.68	3.71
KRH60045	Soybean	extracellular	4.68	3.71
KRH41316	Soybean	extracellular, golgi	4.68	3.71
KRH51264	Soybean	plastid	4.68	3.7
KRH36892	Soybean	golgi, mitochondrion	5.4	3.61
KRH59827	Soybean	extracellular, golgi	4.32	3.43
KRH27832	Soybean	plastid	4.68	3.35
KRH77652	Soybean	plastid	4.68	3.32
KRH43065	Soybean	golgi, mitochondrion, plastid	4.68	3.12
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	4.68	3.03
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	4.68	3.02
KRG97348	Soybean	endoplasmic reticulum	4.68	2.96
KRH58854	Soybean	endoplasmic reticulum, golgi	4.32	2.88
KRH59194	Soybean	golgi, mitochondrion	4.32	2.88
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	4.32	2.78
KRH02967	Soybean	nucleus	4.32	2.78
KRH31569	Soybean	mitochondrion	4.32	2.6
KRH76209	Soybean	endoplasmic reticulum, plastid	3.96	2.51
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	3.96	2.51
KRH42756	Soybean	extracellular, golgi, plastid	4.32	2.43
KRH40009	Soybean	plastid	3.24	2.21

Protein Annotations

MapMan:3.13.6.1	Gene3D:3.40.50.720	EMBL:ACUP02000673	EnsemblPlantsGene:GLYMA_01G215400	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005886	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008830	GO:GO:0008831
GO:GO:0009058	GO:GO:0009506	GO:GO:0009987	GO:GO:0010253	GO:GO:0016020	GO:GO:0019305
GO:GO:0048046	UniProt:K7K549	EnsemblPlants:KRH77471	ProteinID:KRH77471	ProteinID:KRH77471.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF04321	PANTHER:PTHR10366	PANTHER:PTHR10366:SF405	InterPro:RmlD-like-bd	SUPFAM:SSF51735	UniParc:UPI00029545DA

Description

hypothetical protein

Coordinates

chr1:+:54601886..54602858

Molecular Weight (calculated)

31053.0 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.288

Length

278 amino acids

Sequence
(BLAST)

001: MGAEANGGEK QLKFLIYGRS GWIGGLLGKL CEERGIQYEY GTGRLENRSS LEADIAAVKP SHVFNAAGVT GRPNVDWCES HKVETIRTNV VGTLTLADVC
101: HHKGLILINY ATGCIFEYDS SHTLGSGIAF KEHDTPNFTG SFYSKTKAMV EDLVGNYENV CTCITRYDKV VDIPNSMTIL DELLPISLEM AKRNLTGIWN
201: FTNPGVVSHN EILQMYKEYV DPNFTWKNFT LEEQAKVIVA PRSNNELDAS KLKNEFPQLL SIKDSLVKYV FQPNQKKA

Best Arabidopsis Sequence Match ( AT1G53500.1 )
(BLAST)

001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT

Arabidopsis Description

RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.