Factsheet for Zm00001d017601_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, peroxisome

Predictor Summary:

plastid 1
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, peroxisome
Any Predictor:	mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	peroxisome

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07456	Sorghum	cytosol, peroxisome, plastid	94.46	94.46
TraesCS6D01G238800.1	Wheat	peroxisome	87.95	90.0
TraesCS6B01G267600.1	Wheat	peroxisome	87.62	89.67
TraesCS6A01G257500.1	Wheat	peroxisome	87.62	89.67
GSMUA_Achr5P10430_001	Banana	cytosol	86.97	87.25
Os02t0678400-01	Rice	plasma membrane	86.97	85.85
GSMUA_Achr1P03840_001	Banana	cytosol	85.34	85.62
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	86.97	83.7
VIT_02s0025g04610.t01	Wine grape	cytosol	81.11	82.45
CDY45969	Canola	cytosol	78.5	81.14
Bra027005.1-P	Field mustard	cytosol	78.18	80.81
CDY45471	Canola	cytosol	77.85	80.47
PGSC0003DMT400058533	Potato	cytosol	77.52	79.07
AT1G63000.1	Thale cress	cytosol	77.52	79.07
Solyc08g080140.2.1	Tomato	extracellular	76.22	77.74
KRH77471	Soybean	cytosol, endoplasmic reticulum	70.03	77.34
CDY57072	Canola	cytosol, extracellular, peroxisome	79.48	75.54
Bra019776.1-P	Field mustard	cytosol	78.83	75.39
CDX98052	Canola	cytosol	76.55	72.76
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	76.22	34.82
Zm00001d028654_P002	Maize	cytosol	74.59	34.08
Zm00001d037784_P002	Maize	endoplasmic reticulum	75.9	33.48
Zm00001d014509_P001	Maize	cytosol	5.54	5.92
Zm00001d029151_P002	Maize	extracellular, golgi	4.23	3.66
Zm00001d021249_P003	Maize	cytosol	4.23	3.58
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	4.89	3.33
Zm00001d020093_P002	Maize	golgi	3.26	3.31
Zm00001d047683_P003	Maize	mitochondrion	4.56	3.3
Zm00001d028825_P001	Maize	golgi, mitochondrion	4.23	3.08
Zm00001d021026_P001	Maize	endoplasmic reticulum	4.89	3.08
Zm00001d018350_P001	Maize	plasma membrane	4.23	2.96
Zm00001d005598_P001	Maize	plastid	3.26	2.74
Zm00001d037087_P001	Maize	endoplasmic reticulum	3.91	2.73
Zm00001d028427_P001	Maize	plastid	4.23	2.71
Zm00001d047915_P001	Maize	plastid	4.23	2.71
Zm00001d049804_P001	Maize	plasma membrane	3.91	2.68
Zm00001d045078_P001	Maize	extracellular, golgi	3.58	2.66
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	4.23	2.57
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	3.58	2.42
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	3.26	2.36
Zm00001d017999_P002	Maize	mitochondrion	1.3	1.29
Zm00001d034293_P001	Maize	plastid	0.33	0.45
Zm00001d037310_P001	Maize	plastid	0.33	0.33
Zm00001d038116_P001	Maize	plastid	0.0	0.0
Zm00001d017794_P001	Maize	plastid	0.0	0.0
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	0.0	0.0

Protein Annotations

EntrezGene:100286359	MapMan:3.13.6.1	Gene3D:3.40.50.720	ProteinID:AQK73530.1	ProteinID:AQK73531.1	UniProt:B6UIE1
EMBL:BT087707	EMBL:EU977006	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008830	GO:GO:0008831	GO:GO:0009058	GO:GO:0009506
GO:GO:0009987	GO:GO:0010253	GO:GO:0016020	GO:GO:0019305	GO:GO:0048046	GO:GO:0055114
InterPro:NAD(P)-bd_dom_sf	PFAM:PF04321	PANTHER:PTHR10366	PANTHER:PTHR10366:SF405	InterPro:RmlD-like-bd	SUPFAM:SSF51735
UniParc:UPI000182FF03	EnsemblPlantsGene:Zm00001d017601	EnsemblPlants:Zm00001d017601_P001	EnsemblPlants:Zm00001d017601_T001	SEG:seg	:

Description

Bifunctional dTDP-4-dehydrorhamnose 35-epimerase/dTDP-4-dehydrorhamnose reductase

Coordinates

chr5:+:201313634..201316841

Molecular Weight (calculated)

33844.6 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.165

Length

307 amino acids

Sequence
(BLAST)

001: MGTATTNGSA EQASAPVPAL KFLIYGRTGW IGGLLGGLCA ARGIPFVYGA GRLENRAQLE ADIDAAAPTH VFNAAGVTGR PNVDWCETHR AETIRANVVG
101: TLTLADICRG RGVLLINYAT GCIFEYDAGH PLGSGVGFKE EDTPNFVGSF YSKTKAMVEE LLKNYENVCT LRVRMPISSD LSNPRNFITK ITRYDKVVNI
201: PNSMTVLDEL LPISIEMAKR NLTGIWNFTN PGVVSHNEIL EMYRDYIDPG FSWKNFNLEE QAKVIVAPRS NNELDQTKLK REFPELLSIK ESLVKYVFEP
301: NCKASKA

Best Arabidopsis Sequence Match ( AT1G63000.1 )
(BLAST)

001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A

Arabidopsis Description

NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.