Factsheet for Zm00001d020093_P002

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005598_P001
Zm00001d020093_P002
Zm00001d021249_P003
Zm00001d032346_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	Zm00001d021249_P003	AT1G12780.1	21798944
AT4G23920.1	Zm00001d005598_P001	AT4G10960.1	21798944
AT4G23920.1	Zm00001d020093_P002	AT4G10960.1	21798944
AT4G23920.1	Zm00001d032346_P002	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98731	Sorghum	plastid	90.4	74.59
Zm00001d005598_P001	Maize	plastid	89.4	73.97
Os09t0323000-01	Rice	cytosol	79.8	65.31
HORVU5Hr1G055920.8	Barley	plastid	78.48	63.37
TraesCS5D01G188200.1	Wheat	plastid	78.15	62.93
TraesCS5B01G181300.1	Wheat	plastid	78.15	62.93
TraesCS5A01G183100.1	Wheat	plastid	78.15	62.93
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	66.23	57.31
GSMUA_Achr4P02670_001	Banana	golgi	65.89	57.02
AT4G10960.1	Thale cress	golgi	65.89	56.7
GSMUA_Achr5P09200_001	Banana	golgi	66.56	56.62
Bra019257.1-P	Field mustard	plastid	64.9	56.32
Zm00001d029151_P002	Maize	extracellular, golgi	65.89	56.06
CDY50431	Canola	cytosol	64.57	56.03
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	64.24	55.59
CDY47611	Canola	golgi	63.58	55.17
CDY03506	Canola	cytosol, golgi	63.58	55.17
Bra013744.1-P	Field mustard	cytosol, golgi	63.58	55.17
AT4G23920.1	Thale cress	cytosol	63.91	55.14
CDY40862	Canola	cytosol, golgi	63.24	55.04
CDX86828	Canola	golgi	62.91	54.76
Bra035262.1-P	Field mustard	golgi	62.91	54.76
AT1G64440.1	Thale cress	cytosol, golgi	62.91	54.6
Bra027732.1-P	Field mustard	golgi	61.59	54.23
CDY47846	Canola	golgi	61.59	54.23
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	62.25	54.02
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	62.25	54.02
CDY08378	Canola	golgi	61.59	53.91
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	73.84	52.72
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	66.56	47.41
Zm00001d021249_P003	Maize	cytosol	55.3	46.01
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	65.56	45.73
GSMUA_Achr9P06140_001	Banana	plastid	65.89	38.2
GSMUA_Achr6P26620_001	Banana	plastid	65.56	36.87
Zm00001d028825_P001	Maize	golgi, mitochondrion	34.11	24.41
Zm00001d047683_P003	Maize	mitochondrion	34.11	24.29
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	35.43	21.19
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	29.8	19.78
Zm00001d014509_P001	Maize	cytosol	17.55	18.47
Zm00001d017999_P002	Maize	mitochondrion	16.56	16.08
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	18.21	15.9
Zm00001d045078_P001	Maize	extracellular, golgi	20.86	15.25
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	21.85	14.67
Zm00001d018350_P001	Maize	plasma membrane	21.19	14.58
Zm00001d047915_P001	Maize	plastid	22.52	14.2
Zm00001d037087_P001	Maize	endoplasmic reticulum	20.2	13.86
Zm00001d028427_P001	Maize	plastid	21.85	13.78
Zm00001d034293_P001	Maize	plastid	9.93	13.57
Zm00001d049804_P001	Maize	plasma membrane	19.87	13.39
Zm00001d021026_P001	Maize	endoplasmic reticulum	21.19	13.14
Zm00001d037310_P001	Maize	plastid	10.93	10.86
Zm00001d028654_P002	Maize	cytosol	22.52	10.12
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	22.19	9.97
Zm00001d017794_P001	Maize	plastid	11.92	9.65
Zm00001d037784_P002	Maize	endoplasmic reticulum	22.19	9.63
Zm00001d038116_P001	Maize	plastid	9.93	9.26
Zm00001d017601_P001	Maize	extracellular, peroxisome	3.31	3.26

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	UniProt:A0A1D6I244
GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150
GO:GO:0008152	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM54267.1	PFAM:PF16363	PANTHER:PTHR43725
PANTHER:PTHR43725:SF1	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	InterPro:UDP_G4E	UniParc:UPI0008432FE3	EnsemblPlantsGene:Zm00001d020093
EnsemblPlants:Zm00001d020093_P002	EnsemblPlants:Zm00001d020093_T002	:	:	:	:

Description

UDP-glucose 4-epimerase 4

Coordinates

chr7:-:91456986..91467926

Molecular Weight (calculated)

33738.5 Da

IEP (calculated)

7.921

GRAVY (calculated)

-0.135

Length

302 amino acids

Sequence
(BLAST)

001: MPYYVFNLFI KLLMAFWNIQ SVFSNFLFLQ VDIRDKDGLE KVFASTRFDA VIHFAGLKAV GESVQKPLLY YDHNVVGTIN LLEVMAAHGC KKLVFSSSAA
101: VYGSPKNSPC TEDFPLTPHN PYGRTKLMAE EICRDIYHSD PEWNIILLRY FNPVGAHPSG YLGEDPCGTP NNLMPFVQQI AVGRRPSLTI FGNNYATKDG
201: TGVRDYIHVV DLAEGHLFAL KKLFESSSNI GVNIAKIPLI MGQRRPGDAE ILFSSPAKAE RELHWKAKYG ITEMCGDLWN WASKSPYGYA ASESPKLNGS
301: SR

Best Arabidopsis Sequence Match ( AT1G12780.1 )
(BLAST)

001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L

Arabidopsis Description

UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.