Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400007898 | |
| PGSC0003DMT400012829 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G23920.1 | PGSC0003DMT400007898 | AT1G12780.1 | 21798944 |
| AT4G23920.1 | PGSC0003DMT400012829 | AT4G10960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g055930.1.1 | Tomato | cytosol, extracellular, golgi | 99.43 | 99.43 |
| PGSC0003DMT400031994 | Potato | golgi | 83.33 | 82.62 |
| Bra019257.1-P | Field mustard | plastid | 80.17 | 80.17 |
| CDY47611 | Canola | golgi | 78.74 | 78.74 |
| CDY50431 | Canola | cytosol | 78.74 | 78.74 |
| Bra013744.1-P | Field mustard | cytosol, golgi | 78.45 | 78.45 |
| CDY03506 | Canola | cytosol, golgi | 78.45 | 78.45 |
| AT4G23920.1 | Thale cress | cytosol | 78.74 | 78.29 |
| CDY40862 | Canola | cytosol, golgi | 77.59 | 77.81 |
| Bra035262.1-P | Field mustard | golgi | 77.3 | 77.52 |
| CDX86828 | Canola | golgi | 77.3 | 77.52 |
| GSMUA_Achr4P02670_001 | Banana | golgi | 77.3 | 77.08 |
| AT4G10960.1 | Thale cress | golgi | 77.59 | 76.92 |
| GSMUA_Achr5P09200_001 | Banana | golgi | 77.87 | 76.34 |
| CDY47846 | Canola | golgi | 74.71 | 75.8 |
| Bra027732.1-P | Field mustard | golgi | 74.71 | 75.8 |
| GSMUA_Achr6P22620_001 | Banana | golgi, mitochondrion | 75.86 | 75.64 |
| AT1G64440.1 | Thale cress | cytosol, golgi | 75.57 | 75.57 |
| CDY08378 | Canola | golgi | 74.43 | 75.07 |
| GSMUA_Achr9P00170_001 | Banana | extracellular, golgi | 74.71 | 74.5 |
| Os09t0323000-01 | Rice | cytosol | 70.4 | 66.4 |
| HORVU5Hr1G055920.8 | Barley | plastid | 70.98 | 66.04 |
| EER98731 | Sorghum | plastid | 69.25 | 65.85 |
| TraesCS5D01G188200.1 | Wheat | plastid | 70.69 | 65.6 |
| TraesCS5B01G181300.1 | Wheat | plastid | 70.69 | 65.6 |
| TraesCS5A01G183100.1 | Wheat | plastid | 70.69 | 65.6 |
| Zm00001d005598_P001 | Maize | plastid | 67.82 | 64.66 |
| GSMUA_Achr8P27530_001 | Banana | cytosol, golgi, plastid | 76.72 | 62.97 |
| PGSC0003DMT400007898 | Potato | cytosol | 63.51 | 62.96 |
| Zm00001d020093_P002 | Maize | golgi | 54.02 | 62.25 |
| GSMUA_Achr3P16370_001 | Banana | golgi, mitochondrion, plastid | 75.57 | 60.74 |
| Os08t0374800-01 | Rice | golgi | 70.98 | 60.54 |
| Zm00001d032346_P002 | Maize | endoplasmic reticulum, golgi, plastid | 72.41 | 59.57 |
| EES14924 | Sorghum | endoplasmic reticulum, golgi, plastid | 72.41 | 59.57 |
| GSMUA_Achr9P06140_001 | Banana | plastid | 76.15 | 50.86 |
| GSMUA_Achr6P26620_001 | Banana | plastid | 76.72 | 49.72 |
| PGSC0003DMT400041159 | Potato | golgi, mitochondrion | 43.1 | 38.66 |
| PGSC0003DMT400080637 | Potato | golgi | 43.68 | 38.0 |
| PGSC0003DMT400054459 | Potato | mitochondrion | 43.1 | 35.97 |
| PGSC0003DMT400059215 | Potato | plastid | 16.38 | 25.56 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 27.59 | 22.12 |
| PGSC0003DMT400029181 | Potato | cytosol, golgi, peroxisome | 27.01 | 22.12 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 27.87 | 21.65 |
| PGSC0003DMT400010106 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 27.3 | 21.3 |
| PGSC0003DMT400020223 | Potato | endoplasmic reticulum | 26.15 | 21.11 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 26.72 | 20.48 |
| PGSC0003DMT400024810 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 25.57 | 20.46 |
| PGSC0003DMT400018060 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 25.29 | 20.23 |
| PGSC0003DMT400066897 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 25.0 | 20.19 |
| PGSC0003DMT400059216 | Potato | cytosol | 7.47 | 17.33 |
| PGSC0003DMT400075973 | Potato | cytosol, mitochondrion, peroxisome | 26.15 | 13.91 |
| PGSC0003DMT400054754 | Potato | cytosol, mitochondrion, plastid | 26.44 | 13.65 |
| PGSC0003DMT400018192 | Potato | cytosol, mitochondrion, plastid | 25.57 | 13.2 |
| PGSC0003DMT400058533 | Potato | cytosol | 3.45 | 3.99 |
Protein Annotations
| KEGG:00052+5.1.3.2 | KEGG:00520+5.1.3.2 | EntrezGene:102580464 | MapMan:3.13.8 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003978 | GO:GO:0005975 | GO:GO:0006012 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016853 | UniProt:M1A1V4 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | PFAM:PF16363 |
| EnsemblPlantsGene:PGSC0003DMG400004996 | PGSC:PGSC0003DMG400004996 | EnsemblPlants:PGSC0003DMT400012829 | PANTHER:PTHR43725 | PANTHER:PTHR43725:SF11 | SUPFAM:SSF51735 |
| TIGRFAMs:TIGR01179 | InterPro:UDP_G4E | UniParc:UPI0002968CF1 | RefSeq:XP_006360716.1 | : | : |
Description
UDP-glucose 4-epimerase [Source:PGSC_GENE;Acc:PGSC0003DMG400004996]
Coordinates
chr12:-:53626325..53630619
Molecular Weight (calculated)
38235.6 Da
IEP (calculated)
7.816
GRAVY (calculated)
-0.235
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKNILVTGG AGYIGSHTVL QLLLGGYKTV VVDNLDNSSA IAIERVQELA GRFGSNLLFY NIDLRDKPAV EKLFESNKFD AVIHFAGLKA VGESVQKPLM
101: YYNNNITGTI TLLEVMATRG CKNLVFSSSS TVYGWPKEVP CTEESPISAA NPYGRTKLFA EDICRDVYHS DSQWKVILLR YFNPIGAHPS GCIGDDPRGI
201: PNNLMPFVQQ VAVGRRPALT VYGTDYPTKD GTAVRDYIHV VDLADGHIAA LRKLFDPSTG CEVYNLGTGK GSSVLEVVAA FEKASGKKIP LVMSGRRPGD
301: AEIVYAATQK AERELNWRAK YGIEDMCRDQ WNWASKNPYG YEGSKESK
101: YYNNNITGTI TLLEVMATRG CKNLVFSSSS TVYGWPKEVP CTEESPISAA NPYGRTKLFA EDICRDVYHS DSQWKVILLR YFNPIGAHPS GCIGDDPRGI
201: PNNLMPFVQQ VAVGRRPALT VYGTDYPTKD GTAVRDYIHV VDLADGHIAA LRKLFDPSTG CEVYNLGTGK GSSVLEVVAA FEKASGKKIP LVMSGRRPGD
301: AEIVYAATQK AERELNWRAK YGIEDMCRDQ WNWASKNPYG YEGSKESK
001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H
Arabidopsis Description
UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.