Factsheet for PGSC0003DMT400059216

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083550.1.1	Tomato	golgi	94.0	34.73
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	77.33	26.67
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	76.0	26.45
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	76.0	26.21
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	74.0	25.64
VIT_15s0048g00330.t01	Wine grape	plastid	72.67	25.53
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	73.33	23.66
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	69.33	23.32
PGSC0003DMT400020223	Potato	endoplasmic reticulum	66.67	23.2
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	65.33	23.06
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	69.33	22.91
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	65.33	22.58
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	67.33	22.54
PGSC0003DMT400031994	Potato	golgi	18.0	7.69
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	17.33	7.47
PGSC0003DMT400007898	Potato	cytosol	17.33	7.41
PGSC0003DMT400080637	Potato	golgi	16.67	6.25
PGSC0003DMT400041159	Potato	golgi, mitochondrion	14.67	5.67
PGSC0003DMT400054459	Potato	mitochondrion	15.33	5.52
PGSC0003DMT400059215	Potato	plastid	6.67	4.48
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	18.67	4.28
PGSC0003DMT400054754	Potato	cytosol, mitochondrion, plastid	18.0	4.01
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	16.67	3.71
PGSC0003DMT400058533	Potato	cytosol	5.33	2.66

Protein Annotations

EnsemblPlants:PGSC0003DMT400059216	EnsemblPlantsGene:PGSC0003DMG402023002	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PANTHER:PTHR43574
PANTHER:PTHR43574:SF20	PGSC:PGSC0003DMG402023002	PRINTS:PR01713	SEG:seg	SUPFAM:SSF51735	UniParc:UPI00029613E9
UniProt:M1C3Z3	MapMan:3.13.4.1	:	:	:	:

Description

UDP-D-glucuronate 4-epimerase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG402023002]

Coordinates

chr3:+:40292308..40293544

Molecular Weight (calculated)

16927.6 Da

IEP (calculated)

10.343

GRAVY (calculated)

-0.326

Length

150 amino acids

Sequence
(BLAST)

001: MAYFFFTKNI LKGNPISVFQ GSNNKSVARD FTYIDEIVKG CLGALDTAEK STGSGGKKKK NAQLRVFNLG NTSPVPVTKL VSILEKLLKV KAKRNVLPLP
101: RNGDVMFTHA NISYAQKEFG YKPTTDLQMG LQKFVNWYLD YYSIIEKKNY

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.