Factsheet for VIT_15s0048g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
endoplasmic reticulum 1
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g00330.t01	Wine grape	plastid	87.1	94.85
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	87.74	94.23
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	80.43	86.77
Solyc01g091200.2.1	Tomato	nucleus	80.65	86.21
PGSC0003DMT400024810	Potato	cytosol, endoplasmic reticulum, golgi, plastid	79.35	84.83
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	78.92	84.37
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	78.92	83.79
KRH76209	Soybean	endoplasmic reticulum, plastid	78.92	83.79
PGSC0003DMT400018060	Potato	cytosol, endoplasmic reticulum, golgi, plastid	77.42	82.76
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	77.2	82.53
CDX95646	Canola	cytosol, endoplasmic reticulum, golgi, plastid	76.99	82.3
AT2G45310.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	77.2	82.15
CDY67756	Canola	cytosol, endoplasmic reticulum, golgi, plastid	76.56	81.84
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	76.34	81.61
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	64.3	77.06
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	71.61	76.55
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	38.71	76.27
Solyc03g083550.1.1	Tomato	golgi	65.81	75.37
PGSC0003DMT400059216	Potato	cytosol	23.66	73.33
VIT_16s0022g01450.t01	Wine grape	mitochondrion	62.8	71.57
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	62.15	64.08
VIT_02s0025g04210.t01	Wine grape	cytosol	20.0	26.57
VIT_02s0025g01580.t01	Wine grape	golgi	18.71	25.0
VIT_02s0025g01560.t01	Wine grape	golgi	18.28	24.43
VIT_10s0003g05640.t01	Wine grape	golgi	18.92	21.05
VIT_03s0017g00980.t01	Wine grape	golgi	18.71	20.86
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	20.22	14.31
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	20.65	14.22
VIT_02s0025g04610.t01	Wine grape	cytosol	3.01	4.64

Protein Annotations

EntrezGene:100264319	wikigene:100264319	MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EMBL:AM479124
ProteinID:CAN83831	ProteinID:CAN83831.1	ProteinID:CCB61419	ProteinID:CCB61419.1	InterPro:Epimerase_deHydtase	UniProt:F6I3A1
EMBL:FN596739	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016857	GO:GO:0050662
EntrezGene:LOC100264319	wikigene:LOC100264319	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713
PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000210941D	ArrayExpress:VIT_15s0048g00320
EnsemblPlantsGene:VIT_15s0048g00320	EnsemblPlants:VIT_15s0048g00320.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr15:-:14448793..14467538

Molecular Weight (calculated)

52131.7 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.260

Length

465 amino acids

Sequence
(BLAST)

001: MIARFLFSLR LEQDFQQKGF SGFSRFHTYI CKNNKLKQMS HLDNIPSTPG KFKMEKRLRW HSSLAKLTFW SFVFSGLIFI FFFRSPSSSS LPSDSSIRSF
101: RSYSWGGPAW EKRVRSSAKV RARNGISVLV TGAAGFVGTH VSAALKRRGD GVVGLDNFND YYDPSLKRAR QALLERTGVF IVEGDINDSE LLKKLFDVVT
201: FTHVMHLAAQ AGVRYAMENP SSYVHSNIAG LVNLLEVCKS ANPQPAIVWA SSSSVYGLNT KVPFSERDRT DQPASLYAAT KKAGEEMAHT YNHIYGLSLT
301: GLRFFTVYGP WGRPDMAYFF FTRDILKEKS IPIFEAPNHG TVARDFTYID DIVKGCVAAL DTAEKSTGSG GKKKGPAQLR VFNLGNTSPV PVTDLVNILE
401: RLLKVKAKRK MIKMPRNGDV QFTHANISLA QRELGYKPTT DLQTGLKKFV KWYLNYYSAG KKTAH

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.