Factsheet for VIT_02s0025g04210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
golgi 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12780.1	VIT_02s0025g04210.t01	AT1G12780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G12780.1	Thale cress	cytoskeleton, cytosol, peroxisome	85.71	85.47
KRH59827	Soybean	extracellular, golgi	84.57	84.57
Bra016757.1-P	Field mustard	cytosol	84.29	84.05
CDY21065	Canola	cytosol	84.29	84.05
CDY31278	Canola	cytosol	84.29	84.05
KRH41129	Soybean	nucleus	84.0	84.0
CDY47346	Canola	cytosol	84.0	83.76
CDY49193	Canola	cytosol	83.71	83.48
AT1G63180.1	Thale cress	cytosol	83.43	83.19
Bra027626.1-P	Field mustard	cytosol	83.43	83.19
CDY69000	Canola	cytosol	78.57	82.09
Bra019785.1-P	Field mustard	cytosol	78.0	81.49
GSMUA_Achr1P18740_001	Banana	cytosol	80.86	79.94
PGSC0003DMT400007898	Potato	cytosol	80.0	79.77
Bra039253.1-P	Field mustard	cytosol	78.86	79.54
Solyc08g080570.2.1	Tomato	cytosol	79.71	79.49
GSMUA_Achr5P13620_001	Banana	cytosol	77.14	76.92
KXG36042	Sorghum	cytosol	72.0	69.23
Zm00001d021249_P003	Maize	cytosol	71.71	69.15
VIT_02s0025g01560.t01	Wine grape	golgi	67.43	67.82
VIT_02s0025g01580.t01	Wine grape	golgi	66.86	67.24
TraesCS5B01G315700.1	Wheat	cytosol	69.43	66.03
TraesCS5D01G321100.1	Wheat	cytosol	69.43	65.85
TraesCS5A01G314800.1	Wheat	cytosol	69.14	65.76
Os09t0526700-01	Rice	cytosol	67.71	63.54
HORVU5Hr1G080860.10	Barley	mitochondrion	69.14	57.08
CDY60264	Canola	plastid	84.86	48.61
VIT_10s0003g05640.t01	Wine grape	golgi	38.0	31.82
VIT_03s0017g00980.t01	Wine grape	golgi	37.71	31.65
VIT_16s0022g01450.t01	Wine grape	mitochondrion	27.43	23.53
VIT_15s0048g00330.t01	Wine grape	plastid	26.57	21.78
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	24.0	21.65
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	14.57	21.61
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	26.29	21.25
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	26.29	21.15
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	26.86	20.84
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	26.57	20.0
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	24.29	12.94
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	23.14	12.0
VIT_02s0025g04610.t01	Wine grape	cytosol	4.0	4.64

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	EntrezGene:100266776	wikigene:100266776	MapMan:3.13.8	Gene3D:3.40.50.720
Gene3D:3.90.25.10	ProteinID:CBI34731	ProteinID:CBI34731.3	UniProt:D7TW56	EMBL:FN596251	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975
GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853
EntrezGene:LOC100266776	wikigene:LOC100266776	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725
PANTHER:PTHR43725:SF9	SUPFAM:SSF51735	TIGR:TC55131	TIGR:TC68545	TIGRFAMs:TIGR01179	InterPro:UDP_G4E
UniParc:UPI00015CD47D	ArrayExpress:VIT_02s0025g04210	EnsemblPlantsGene:VIT_02s0025g04210	EnsemblPlants:VIT_02s0025g04210.t01	unigene:Vvi.741	RefSeq:XP_002283103
RefSeq:XP_002283103.1	RefSeq:XP_019072767.1	:	:	:	:

Description

No Description!

Coordinates

chr2:-:3729322..3733010

Molecular Weight (calculated)

39031.0 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.221

Length

350 amino acids

Sequence
(BLAST)

001: MALYDRTILV TGGAGFIGTH TVVQLLSEGF TVWIIDNLDN SVLEAIERVR DLVGAELSRK LHFNLGDLRN KADLEKLFSQ TKFDAVIHFA GLKAVGESVV
101: NPRRYFDNNL IGTINLYEIM AKYNCKKMVF SSSATVYGQP DKIPCVEDFN LMAMNPYGRT KLFLEEIARD IQKAEPDWKI ILLRYFNPVG AHESGKLGED
201: PKGIPNNLMP YIQQVAVGRL PELNVYGHDY PTRDGSAIRD YIHVMDLADG HIAALRKLFT SEDIGCTAYN LGTGQGTSVL EMVAAFEKAS GKKIPIKLCP
301: RRAGDATAVY ASTEKAAKEL GWKAKYGIAE MCRDQWKWAS NNPWGYHSKP

Best Arabidopsis Sequence Match ( AT1G12780.1 )
(BLAST)

001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L

Arabidopsis Description

UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.