Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY69000 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12780.1 | CDY69000 | AT1G12780.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019785.1-P | Field mustard | cytosol | 99.1 | 99.1 |
| CDY31278 | Canola | cytosol | 91.94 | 87.75 |
| CDY21065 | Canola | cytosol | 91.64 | 87.46 |
| AT1G12780.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 90.75 | 86.61 |
| CDY49193 | Canola | cytosol | 87.76 | 83.76 |
| CDY47346 | Canola | cytosol | 87.76 | 83.76 |
| KRH59827 | Soybean | extracellular, golgi | 82.99 | 79.43 |
| KRH41129 | Soybean | nucleus | 82.39 | 78.86 |
| VIT_02s0025g04210.t01 | Wine grape | cytosol | 82.09 | 78.57 |
| GSMUA_Achr1P18740_001 | Banana | cytosol | 77.31 | 73.16 |
| Solyc08g080570.2.1 | Tomato | cytosol | 75.82 | 72.36 |
| PGSC0003DMT400007898 | Potato | cytosol | 75.82 | 72.36 |
| GSMUA_Achr5P13620_001 | Banana | cytosol | 74.63 | 71.23 |
| CDY49495 | Canola | cytosol | 19.7 | 67.35 |
| KXG36042 | Sorghum | cytosol | 72.54 | 66.76 |
| Zm00001d021249_P003 | Maize | cytosol | 71.04 | 65.56 |
| CDY47611 | Canola | golgi | 66.57 | 64.08 |
| CDX86828 | Canola | golgi | 66.27 | 63.98 |
| CDY40862 | Canola | cytosol, golgi | 65.97 | 63.69 |
| CDY03506 | Canola | cytosol, golgi | 65.97 | 63.51 |
| TraesCS5B01G315700.1 | Wheat | cytosol | 69.55 | 63.32 |
| CDY47846 | Canola | golgi | 64.78 | 63.27 |
| CDY50431 | Canola | cytosol | 65.67 | 63.22 |
| TraesCS5A01G314800.1 | Wheat | cytosol | 69.25 | 63.04 |
| CDY08378 | Canola | golgi | 64.78 | 62.9 |
| TraesCS5D01G321100.1 | Wheat | cytosol | 68.96 | 62.6 |
| Os09t0526700-01 | Rice | cytosol | 66.27 | 59.52 |
| HORVU5Hr1G080860.10 | Barley | mitochondrion | 68.96 | 54.48 |
| CDY60264 | Canola | plastid | 92.54 | 50.74 |
| CDY71965 | Canola | cytosol, mitochondrion | 25.07 | 35.29 |
| CDY02312 | Canola | mitochondrion | 40.6 | 32.38 |
| CDY09555 | Canola | mitochondrion | 40.6 | 32.38 |
| CDY29113 | Canola | golgi | 39.7 | 32.28 |
| CDX78998 | Canola | mitochondrion | 39.1 | 31.87 |
| CDY13102 | Canola | golgi | 39.1 | 31.8 |
| CDY49015 | Canola | golgi | 39.1 | 31.8 |
| CDY49498 | Canola | golgi | 39.1 | 31.8 |
| CDX82768 | Canola | mitochondrion | 38.81 | 31.63 |
| CDY52524 | Canola | golgi | 38.81 | 30.66 |
| CDY31644 | Canola | golgi | 38.51 | 30.42 |
| CDX97356 | Canola | cytosol, endoplasmic reticulum, golgi | 26.87 | 20.98 |
| CDY04398 | Canola | cytosol, endoplasmic reticulum, golgi | 26.57 | 20.75 |
| CDX94504 | Canola | cytosol, endoplasmic reticulum, peroxisome | 26.87 | 20.69 |
| CDX86716 | Canola | cytosol, endoplasmic reticulum, peroxisome | 26.57 | 20.51 |
| CDY70926 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 25.97 | 20.28 |
| CDY28188 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 25.97 | 20.28 |
| CDY63064 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 25.67 | 20.0 |
| CDY67756 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 25.67 | 19.77 |
| CDX95646 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 25.67 | 19.77 |
| CDY64583 | Canola | endoplasmic reticulum | 26.87 | 19.57 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 26.87 | 19.57 |
| CDX72242 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 25.07 | 19.53 |
| CDY39205 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 25.07 | 19.53 |
| CDX77481 | Canola | endoplasmic reticulum | 26.27 | 19.43 |
| CDX92990 | Canola | endoplasmic reticulum | 26.27 | 19.3 |
| CDX85133 | Canola | endoplasmic reticulum | 26.27 | 19.3 |
| CDY53207 | Canola | endoplasmic reticulum | 25.97 | 19.12 |
| CDY25850 | Canola | cytosol, mitochondrion, peroxisome | 21.79 | 17.06 |
| CDY35137 | Canola | cytosol, mitochondrion, plastid | 24.48 | 12.24 |
| CDY40003 | Canola | cytosol, mitochondrion, plastid | 24.48 | 12.24 |
| CDY45116 | Canola | cytosol, mitochondrion, peroxisome | 23.88 | 12.03 |
| CDY24092 | Canola | cytosol, mitochondrion, peroxisome | 23.88 | 12.03 |
| CDY60210 | Canola | cytosol, mitochondrion, peroxisome | 23.88 | 11.98 |
| CDX88455 | Canola | cytosol, peroxisome, plastid | 24.78 | 11.74 |
| CDY32340 | Canola | cytosol, mitochondrion, peroxisome | 22.39 | 11.66 |
| CDY20084 | Canola | cytosol, mitochondrion, peroxisome | 22.39 | 11.65 |
| CDX97601 | Canola | cytosol, mitochondrion, plastid | 22.09 | 11.46 |
| CDX98494 | Canola | cytosol, mitochondrion, plastid | 22.09 | 11.46 |
| CDX81794 | Canola | plastid | 7.76 | 7.49 |
| CDY71423 | Canola | cytosol, nucleus | 7.46 | 5.8 |
| CDY72469 | Canola | cytosol | 2.09 | 5.3 |
| CDY45471 | Canola | cytosol | 3.88 | 4.38 |
| CDY45969 | Canola | cytosol | 3.88 | 4.38 |
| CDY57072 | Canola | cytosol, extracellular, peroxisome | 4.18 | 4.33 |
| CDX98052 | Canola | cytosol | 3.28 | 3.41 |
Protein Annotations
| KEGG:00052+5.1.3.2 | KEGG:00520+5.1.3.2 | MapMan:3.13.8 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | GO:A0A078JRE8 |
| UniProt:A0A078JRE8 | EnsemblPlants:CDY69000 | ProteinID:CDY69000 | ProteinID:CDY69000.1 | InterPro:Epimerase_deHydtase | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003978 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0005975 | GO:GO:0006012 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016853 | GO:GO:0050373 | GO:GO:0050662 | EnsemblPlantsGene:GSBRNA2T00081997001 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF01370 | PANTHER:PTHR43725 | PANTHER:PTHR43725:SF9 | MetaCyc:PWY-3821 | MetaCyc:PWY-6317 |
| MetaCyc:PWY-6397 | MetaCyc:PWY-6527 | MetaCyc:PWY-7328 | MetaCyc:PWY-7344 | SUPFAM:SSF51735 | TIGRFAMs:TIGR01179 |
| InterPro:UDP_G4E | UniPathway:UPA00214 | UniParc:UPI0004EEA3AD | : | : | : |
Description
BnaA06g38100DBnaA06g38100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRE8]
Coordinates
chrLK038431:-:2126..4335
Molecular Weight (calculated)
37628.2 Da
IEP (calculated)
8.186
GRAVY (calculated)
-0.383
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSMEQNIL VTGGAGFIGT HTVVQLLKEG FKVSIIDNLD NSVLEAVDRV RELVGPNLSK KLEFNLGDLR NKEDIEKLFS KQRFDAVIHF AALKGVGESV
101: GIPRRYYDNN LVGTINLYET MSKYNCKMMV FSSSATVYGE PKKIPCLFLE EIARDIHRAE PEWRIVLLRY FNPVGAHESG RIGEDPKGIP NNLMPYIQQV
201: AVGRQPELNV YGHDYPTKDG SAVRDYIHVM DLADGHIAAL RKLFTDPKIG CTAYNLGTGR GTSVLEMVAA FEKASGKKIP MKLCPRRPGD STVVYASTEK
301: AEKELGWKAK YGVDEMCRDQ WNWTNNNPWG YQKKL
101: GIPRRYYDNN LVGTINLYET MSKYNCKMMV FSSSATVYGE PKKIPCLFLE EIARDIHRAE PEWRIVLLRY FNPVGAHESG RIGEDPKGIP NNLMPYIQQV
201: AVGRQPELNV YGHDYPTKDG SAVRDYIHVM DLADGHIAAL RKLFTDPKIG CTAYNLGTGR GTSVLEMVAA FEKASGKKIP MKLCPRRPGD STVVYASTEK
301: AEKELGWKAK YGVDEMCRDQ WNWTNNNPWG YQKKL
001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L
Arabidopsis Description
UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]
SUBAcon: [peroxisome,cytoskeleton,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.