Subcellular Localization
min:
: max
Winner_takes_all: cytosol, peroxisome, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20084 | Canola | cytosol, mitochondrion, peroxisome | 98.6 | 98.45 |
| CDX98494 | Canola | cytosol, mitochondrion, plastid | 94.87 | 94.43 |
| CDX97601 | Canola | cytosol, mitochondrion, plastid | 94.87 | 94.43 |
| AT3G14790.2 | Thale cress | mitochondrion | 94.4 | 91.0 |
| CDY60210 | Canola | cytosol, mitochondrion, peroxisome | 91.45 | 88.02 |
| CDY45116 | Canola | cytosol, mitochondrion, peroxisome | 90.67 | 87.67 |
| CDY24092 | Canola | cytosol, mitochondrion, peroxisome | 90.51 | 87.52 |
| CDY25850 | Canola | cytosol, mitochondrion, peroxisome | 55.99 | 84.11 |
| GSMUA_Achr4P10430_001 | Banana | cytosol, extracellular, mitochondrion | 84.29 | 83.51 |
| CDY71423 | Canola | cytosol, nucleus | 54.9 | 81.9 |
| CDY40003 | Canola | cytosol, mitochondrion, plastid | 85.07 | 81.64 |
| CDY35137 | Canola | cytosol, mitochondrion, plastid | 85.07 | 81.64 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 80.4 | 81.29 |
| Zm00001d047796_P003 | Maize | extracellular, nucleus, plasma membrane | 83.67 | 80.06 |
| Os03t0278200-01 | Rice | nucleus, plasma membrane | 83.98 | 80.0 |
| CDY45969 | Canola | cytosol | 36.86 | 79.8 |
| EER95078 | Sorghum | cytosol, mitochondrion, peroxisome | 83.36 | 79.76 |
| EER95086 | Sorghum | cytosol, mitochondrion, plastid | 83.36 | 79.76 |
| TraesCS4A01G099200.1 | Wheat | cytosol | 83.67 | 79.7 |
| GSMUA_Achr3P31810_001 | Banana | cytosol, mitochondrion, peroxisome | 76.83 | 79.55 |
| Zm00001d028654_P002 | Maize | cytosol | 82.74 | 79.17 |
| CDY45471 | Canola | cytosol | 36.55 | 79.12 |
| TraesCS4D01G206000.1 | Wheat | mitochondrion | 83.67 | 78.89 |
| CDX88455 | Canola | cytosol, peroxisome, plastid | 86.63 | 78.78 |
| TraesCS4B01G205100.3 | Wheat | mitochondrion | 83.51 | 78.74 |
| VIT_04s0069g00830.t01 | Wine grape | cytosol, mitochondrion, plastid | 77.61 | 75.95 |
| PGSC0003DMT400075973 | Potato | cytosol, mitochondrion, peroxisome | 75.74 | 74.46 |
| HORVU4Hr1G059120.2 | Barley | plastid | 83.36 | 74.14 |
| Solyc08g069110.2.1 | Tomato | unclear | 74.96 | 74.04 |
| GSMUA_Achr3P31820_001 | Banana | cytosol, mitochondrion, plastid | 68.74 | 73.06 |
| CDY57072 | Canola | cytosol, extracellular, peroxisome | 36.24 | 72.14 |
| KRH04933 | Soybean | cytosol, mitochondrion, plastid | 72.16 | 72.05 |
| KRH16155 | Soybean | cytosol | 73.25 | 71.91 |
| CDX98052 | Canola | cytosol | 35.93 | 71.52 |
| CDX81794 | Canola | plastid | 35.15 | 65.13 |
| CDY72469 | Canola | cytosol | 12.44 | 60.61 |
| CDY71965 | Canola | cytosol, mitochondrion | 9.33 | 25.21 |
| CDY47846 | Canola | golgi | 12.91 | 24.2 |
| CDY08378 | Canola | golgi | 12.75 | 23.77 |
| CDY50431 | Canola | cytosol | 12.6 | 23.28 |
| CDY21065 | Canola | cytosol | 12.6 | 23.08 |
| CDY31278 | Canola | cytosol | 12.6 | 23.08 |
| CDY03506 | Canola | cytosol, golgi | 12.44 | 22.99 |
| CDY47611 | Canola | golgi | 12.44 | 22.99 |
| CDY40862 | Canola | cytosol, golgi | 12.13 | 22.48 |
| CDX86828 | Canola | golgi | 12.13 | 22.48 |
| CDY69000 | Canola | cytosol | 11.66 | 22.39 |
| CDY47346 | Canola | cytosol | 12.13 | 22.22 |
| CDY49193 | Canola | cytosol | 12.13 | 22.22 |
| CDX86716 | Canola | cytosol, endoplasmic reticulum, peroxisome | 13.84 | 20.51 |
| CDX94504 | Canola | cytosol, endoplasmic reticulum, peroxisome | 13.84 | 20.46 |
| CDY04398 | Canola | cytosol, endoplasmic reticulum, golgi | 13.53 | 20.28 |
| CDX97356 | Canola | cytosol, endoplasmic reticulum, golgi | 13.53 | 20.28 |
| CDY67756 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 13.53 | 20.0 |
| CDY63064 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 13.37 | 20.0 |
| CDX77481 | Canola | endoplasmic reticulum | 14.0 | 19.87 |
| CDX95646 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 13.37 | 19.77 |
| CDX85133 | Canola | endoplasmic reticulum | 14.0 | 19.74 |
| CDX92990 | Canola | endoplasmic reticulum | 14.0 | 19.74 |
| CDX78998 | Canola | mitochondrion | 12.6 | 19.71 |
| CDY53207 | Canola | endoplasmic reticulum | 13.84 | 19.56 |
| CDX82768 | Canola | mitochondrion | 12.44 | 19.46 |
| CDY64583 | Canola | endoplasmic reticulum | 13.84 | 19.35 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 13.84 | 19.35 |
| CDY70926 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 12.91 | 19.35 |
| CDY28188 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 12.91 | 19.35 |
| CDX72242 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 12.91 | 19.3 |
| CDY39205 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 12.91 | 19.3 |
| CDY02312 | Canola | mitochondrion | 12.29 | 18.81 |
| CDY09555 | Canola | mitochondrion | 12.29 | 18.81 |
| CDY13102 | Canola | golgi | 11.98 | 18.69 |
| CDY29113 | Canola | golgi | 11.98 | 18.69 |
| CDY49015 | Canola | golgi | 11.98 | 18.69 |
| CDY49498 | Canola | golgi | 11.98 | 18.69 |
| CDY31644 | Canola | golgi | 12.13 | 18.4 |
| CDY52524 | Canola | golgi | 12.13 | 18.4 |
| CDY49495 | Canola | cytosol | 2.18 | 14.29 |
| CDY60264 | Canola | plastid | 12.75 | 13.42 |
Protein Annotations
| EnsemblPlants:CDY32340 | EnsemblPlantsGene:GSBRNA2T00051856001 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf |
| InterPro:RmlD-like-bd | PANTHER:PTHR43000 | PANTHER:PTHR43000:SF8 | PFAM:PF04321 | PFAM:PF16363 | ProteinID:CDY32340 |
| ProteinID:CDY32340.1 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0004EE824B | UniProt:A0A078H0V0 | MapMan:3.13.6.1 |
Description
BnaC01g36590DBnaC01g36590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0V0]
Coordinates
chrLK032292:-:241605..243593
Molecular Weight (calculated)
72510.3 Da
IEP (calculated)
6.464
GRAVY (calculated)
-0.425
Length
643 amino acids
Sequence
(BLAST)
(BLAST)
001: MATYKPKNIL ITGAAGFIAS HVANRLVRTY PHYKIVVLDK LDYCSNLKNL NPSKSSPNFK FVKGDIASDD LTHVDNSFGN SFEFTKNNIY GTHVLLEACK
101: VTGQIRRFIH VSTDEVYGET DEDASVGNHE ASQLLPTNPY SATKAGAEML VMAYGRSYGL PVITTRGNNV YGPNQFPEKL IPKFMLLAMN GKPLPIHGDG
201: SNVRSYLYCE DVAEAFEVVL HKGEVNHVYN IGTTRERRVI DVANDISKLF GTDPDSTIQF VENRPFNDQR YFLDDQKLKK LGWSELTTWE EGLRKTMEWY
301: TENPDWWGDV TGALLPHPRM LMMPGDRLCD NCDDDHKDVA DGNQTFTVVT PSGDNKTPFK FLIYGKTGWL GGLLGKLCEK QGIPYEYGKG RLEDRASVMA
401: DIRSVKPTHV FNAAGVTGRP NVDWCESHKT ETIRANVAGT LTLADVCREN GLLMMNFATG CIFEYDAAHP EGSGIGFKEE DKPNFTGSFY SKTKAMVEEL
501: LREYDNVCTL RVRMPISSDL NNPRNFITKI SRYNKVVNIP NSMTILDELL PISIEMAKRN LRGVWNFTNP GVVSHNEILE MYKSYIEPSF KWSNFTLEEQ
601: AKVIVAPRSN NEMDGAKLSK EFPEMLPIKE SLIKYVFEPN KRT
101: VTGQIRRFIH VSTDEVYGET DEDASVGNHE ASQLLPTNPY SATKAGAEML VMAYGRSYGL PVITTRGNNV YGPNQFPEKL IPKFMLLAMN GKPLPIHGDG
201: SNVRSYLYCE DVAEAFEVVL HKGEVNHVYN IGTTRERRVI DVANDISKLF GTDPDSTIQF VENRPFNDQR YFLDDQKLKK LGWSELTTWE EGLRKTMEWY
301: TENPDWWGDV TGALLPHPRM LMMPGDRLCD NCDDDHKDVA DGNQTFTVVT PSGDNKTPFK FLIYGKTGWL GGLLGKLCEK QGIPYEYGKG RLEDRASVMA
401: DIRSVKPTHV FNAAGVTGRP NVDWCESHKT ETIRANVAGT LTLADVCREN GLLMMNFATG CIFEYDAAHP EGSGIGFKEE DKPNFTGSFY SKTKAMVEEL
501: LREYDNVCTL RVRMPISSDL NNPRNFITKI SRYNKVVNIP NSMTILDELL PISIEMAKRN LRGVWNFTNP GVVSHNEILE MYKSYIEPSF KWSNFTLEEQ
601: AKVIVAPRSN NEMDGAKLSK EFPEMLPIKE SLIKYVFEPN KRT
001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
Arabidopsis Description
RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [extracellular,cytosol,peroxisome]
SUBAcon: [extracellular,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.