Factsheet for TraesCS4A01G099200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G099200.1
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4B01G205100.3
TraesCS4D01G122000.1
TraesCS4D01G206000.1
TraesCS5A01G144000.1
TraesCS5B01G143100.1
TraesCS5D01G148000.1
TraesCS6A01G257500.1
TraesCS6B01G267600.1
TraesCS6D01G238800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	TraesCS6A01G257500.1	AT1G63000.1	21798944
AT1G78570.1	TraesCS6B01G267600.1	AT1G63000.1	21798944
AT1G78570.1	TraesCS6D01G238800.1	AT1G63000.1	21798944
AT1G78570.1	TraesCS4A01G099200.1	AT1G78570.1	21798944
AT1G78570.1	TraesCS4B01G205100.3	AT1G78570.1	21798944
AT1G78570.1	TraesCS4D01G206000.1	AT1G78570.1	21798944
AT1G78570.1	TraesCS4A01G191300.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS4B01G124000.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS4D01G122000.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS5A01G144000.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS5B01G143100.1	AT3G54220.1	19228333
AT1G78570.1	TraesCS5D01G148000.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G206000.1	Wheat	mitochondrion	99.85	98.83
TraesCS4B01G205100.3	Wheat	mitochondrion	99.85	98.83
Os03t0278200-01	Rice	nucleus, plasma membrane	94.22	94.22
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	93.33	93.75
EER95086	Sorghum	cytosol, mitochondrion, plastid	92.59	93.01
HORVU4Hr1G059120.2	Barley	plastid	99.11	92.53
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	92.0	92.41
Zm00001d028654_P002	Maize	cytosol	91.41	91.82
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	84.0	84.75
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	82.96	84.21
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	83.56	84.18
CDX97601	Canola	cytosol, mitochondrion, plastid	80.44	84.06
CDX98494	Canola	cytosol, mitochondrion, plastid	80.3	83.9
CDY32340	Canola	cytosol, mitochondrion, peroxisome	79.7	83.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	78.67	83.49
AT3G14790.2	Thale cress	mitochondrion	82.37	83.36
CDY40003	Canola	cytosol, mitochondrion, plastid	82.67	83.28
CDY20084	Canola	cytosol, mitochondrion, peroxisome	79.41	83.23
CDY35137	Canola	cytosol, mitochondrion, plastid	82.37	82.99
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	79.11	82.92
CDY25850	Canola	cytosol, mitochondrion, peroxisome	52.44	82.71
CDY24092	Canola	cytosol, mitochondrion, peroxisome	81.48	82.71
CDY45116	Canola	cytosol, mitochondrion, peroxisome	81.48	82.71
CDY60210	Canola	cytosol, mitochondrion, peroxisome	81.78	82.63
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	82.22	82.59
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	81.63	82.48
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	81.19	82.41
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	81.33	82.31
CDX88455	Canola	cytosol, peroxisome, plastid	83.7	79.92
TraesCS6A01G257500.1	Wheat	peroxisome	34.96	78.67
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	76.44	78.54
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	74.37	76.76
Solyc08g069110.2.1	Tomato	unclear	73.93	76.65
TraesCS1A01G315300.1	Wheat	cytosol, mitochondrion, plastid	41.19	75.54
KRH16155	Soybean	cytosol	73.04	75.27
KRH04933	Soybean	cytosol, mitochondrion, plastid	71.7	75.16
TraesCS1A01G443900.1	Wheat	endoplasmic reticulum, golgi	12.59	24.01
TraesCS5A01G183100.1	Wheat	plastid	12.74	22.93
TraesCS5A01G314800.1	Wheat	cytosol	12.44	22.83
TraesCS5A01G291300.1	Wheat	golgi	13.19	21.14
TraesCS2A01G460400.1	Wheat	unclear	12.44	20.39
TraesCS7A01G311100.1	Wheat	golgi	12.15	20.25
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	13.19	20.09
TraesCS6A01G353200.1	Wheat	plastid	12.89	19.86
TraesCS5A01G281600.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	13.33	18.67
TraesCS4A01G080300.1	Wheat	plastid	13.19	18.62
TraesCS7A01G256600.1	Wheat	plastid	13.48	18.57

Protein Annotations

EnsemblPlants:TraesCS4A01G099200.1	EnsemblPlantsGene:TraesCS4A01G099200	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363	SUPFAM:SSF51735
TIGR:cd05246	TIGR:cd05254	MapMan:3.13.6.1	:	:	:

Description

No Description!

Coordinates

chr4A:+:111166406..111168522

Molecular Weight (calculated)

75970.7 Da

IEP (calculated)

6.826

GRAVY (calculated)

-0.337

Length

675 amino acids

Sequence
(BLAST)

001: MATYEPKNIL ITGAAGFIAS HVANRLIRSY PHYKIVVLDK IDYCSNLKNL NPSRPSPNFK FVKGDIASAD LVNYLLITES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMKG LPLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTVKERRVID VASDICKLFG LDTEKVIRFV ENRPFNDQRY FLDDQKLKKL
301: GWAERTTWEE GLKKTIEWYT SNPDYWGDVA GALLPHPRML MTPGVERHNW TEEIKSLASS PAEAKECSTV PAAATSKSTS SVPQKATYKF LIYGKTGWIG
401: GLLGKICEKQ GIPYEYGKGR LQERSQLLQD IRNVKPTHVF NAAGVTGRPN VDWCETHKQD TIRTNVVGTL NLADVCREQG LLMINYATGC IFEYNAEHPE
501: GSGIGFKEED TPNFVGSFYS KTKAMVEELL KDYDNVCTLR VRMPISSDLS NPRNFITKIA RYDKVVNIPN SMTILDELLP ISVEMAKRDC RGIWNFTNPG
601: VVSHNEILEM YKEYINPDFK WTNFTLEEQA KVIVAPRSNN EMDASKLKSE FPELLSIKES LIKNVFEPNR KVSTN

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.