Factsheet for TraesCS4A01G080300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, golgi, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G224000.1	Wheat	plastid	98.54	97.72
TraesCS4B01G223700.1	Wheat	plastid	98.74	96.13
EER95171	Sorghum	plastid	92.89	92.5
Zm00001d028427_P001	Maize	plastid	92.26	92.07
HORVU4Hr1G063010.1	Barley	peroxisome	98.12	91.25
Zm00001d047915_P001	Maize	plastid	91.0	90.81
Os03t0249500-01	Rice	plastid	91.84	90.7
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	35.98	72.88
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	64.02	71.16
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	67.57	70.37
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	60.25	66.21
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	59.0	65.73
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	53.35	65.72
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	59.0	65.58
PGSC0003DMT400059215	Potato	plastid	30.54	65.47
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	59.41	65.29
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	59.2	65.21
AT4G12250.1	Thale cress	cytosol, endoplasmic reticulum, golgi	59.2	64.91
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	59.0	64.83
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	58.16	64.8
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	58.16	64.8
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	58.16	64.8
VIT_16s0022g01450.t01	Wine grape	mitochondrion	53.77	62.99
KRH40009	Soybean	plastid	53.14	62.41
TraesCS6A01G353200.1	Wheat	plastid	56.69	61.87
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	55.86	60.27
Solyc08g079440.1.1	Tomato	nucleus	55.65	59.78
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	55.02	58.97
TraesCS7A01G256600.1	Wheat	plastid	57.11	55.71
TraesCS5A01G281600.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	55.44	54.98
TraesCS1A01G443900.1	Wheat	endoplasmic reticulum, golgi	19.04	25.71
TraesCS5A01G314800.1	Wheat	cytosol	19.46	25.27
TraesCS5A01G183100.1	Wheat	plastid	19.04	24.27
TraesCS7A01G311100.1	Wheat	golgi	17.99	21.23
TraesCS1A01G315300.1	Wheat	cytosol, mitochondrion, plastid	16.32	21.2
TraesCS5A01G291300.1	Wheat	golgi	18.2	20.67
TraesCS2A01G460400.1	Wheat	unclear	17.57	20.39
TraesCS4A01G099200.1	Wheat	cytosol	18.62	13.19
TraesCS6A01G257500.1	Wheat	peroxisome	2.3	3.67

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0005802	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857
GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574
PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G080300	EnsemblPlants:TraesCS4A01G080300.1	SEG:seg

Description

No Description!

Coordinates

chr4A:+:82846946..82848382

Molecular Weight (calculated)

51417.4 Da

IEP (calculated)

10.486

GRAVY (calculated)

-0.192

Length

478 amino acids

Sequence
(BLAST)

001: MAPQLTGAPG SAAAAGGAAA VKPQFHHYHH HRLPPRHHHP PSLLSKLAFW SVCSLALLLA FLLLAPSSAP APRAAPDSPR RSLHARPDSA AAWGGAAWER
101: KVRASARARR PGLSVLVTGA AGFVGCHAAA ALRRRGDGVL GLDNFNDYYD PALKRGRAAL LARSGVYVVD GDIADAELLA KLFDVAPFTH VLHLAAQAGV
201: RHALVDPMSY VRANVAGLVA LLEAARAADP QPAIVWASSS SVYGLNSHVP FSEHDRTDRP ASLYAATKKA GEEIAHVYNH IYGLSLTALR FFTVYGPWGR
301: PDMAYFFFTR DILAGRPITV YESSGGGTHQ TTISRDFTYI DDIVKGCIGA LDTAGRSTGS GGKKRGPAPF RTYNLGNTSP VPVTQLVDLL EKMLKVKAVR
401: RVVKMPRNGD VPYTHANISL AQRELGYRPS TDLQTGLKKF VRWYLEYYNP ELAVKQKQHG SSNGKGSRGR NGSTSSAR

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.