Factsheet for VIT_00s2240g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
endoplasmic reticulum 2
golgi 3
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	100.0	89.2
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	45.1	74.15
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	78.61	70.44
VIT_15s0048g00330.t01	Wine grape	plastid	77.32	70.26
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	75.26	67.91
AT4G12250.1	Thale cress	cytosol, endoplasmic reticulum, golgi	75.52	67.2
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	74.23	67.13
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	74.23	67.13
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	73.97	66.9
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	73.97	66.9
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	74.48	66.44
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	74.23	66.21
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	73.97	66.13
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	73.97	64.35
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	77.06	64.3
Solyc08g079440.1.1	Tomato	nucleus	73.45	64.04
VIT_16s0022g01450.t01	Wine grape	mitochondrion	67.27	63.97
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	68.81	62.09
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	72.68	61.44
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	63.14	54.32
Zm00001d028427_P001	Maize	plastid	66.49	53.86
TraesCS4D01G224000.1	Wheat	plastid	66.75	53.73
EER95171	Sorghum	plastid	66.24	53.54
TraesCS4A01G080300.1	Wheat	plastid	65.72	53.35
Os03t0249500-01	Rice	plastid	66.49	53.31
Zm00001d047915_P001	Maize	plastid	65.21	52.82
TraesCS4B01G223700.1	Wheat	plastid	66.75	52.75
HORVU4Hr1G063010.1	Barley	peroxisome	66.49	50.19
VIT_02s0025g04210.t01	Wine grape	cytosol	21.65	24.0
VIT_02s0025g01580.t01	Wine grape	golgi	20.36	22.7
VIT_02s0025g01560.t01	Wine grape	golgi	20.1	22.41
VIT_10s0003g05640.t01	Wine grape	golgi	21.13	19.62
VIT_03s0017g00980.t01	Wine grape	golgi	20.1	18.7
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	21.65	12.44
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	20.88	12.33
VIT_02s0025g04610.t01	Wine grape	cytosol	1.03	1.32

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	ProteinID:CCB62981	ProteinID:CCB62981.1	InterPro:Epimerase_deHydtase
EMBL:FN596941	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016857	GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF01370
PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF1	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI00039398C7
ArrayExpress:VIT_00s2240g00010	EnsemblPlantsGene:VIT_00s2240g00010	EnsemblPlants:VIT_00s2240g00010.t01	RefSeq:XP_003635629	RefSeq:XP_003635629.1	SEG:seg

Description

No Description!

Coordinates

chrUn:+:41417853..41419217

Molecular Weight (calculated)

43140.7 Da

IEP (calculated)

10.291

GRAVY (calculated)

-0.245

Length

388 amino acids

Sequence
(BLAST)

001: MSQHMDNIPS TPGKFKSDKY HYIHRFRSHS SLAKLILWSL FFFSVICFFF LLSPTSPTSP PADRSRRVLA NYTWGGPEWE KKVRQSARVR SDHGHTVLVT
101: GGAGFVGSHV SAALKRRGDG VIGLDNFNNY YDPELKRHRR DLLERAGVFV VEGDINDSEL LRKLFDVVAF THVMHLAAQA GVRYAMQNPK SYVNSNIAGL
201: VNLLEVCKSA DPQPAIVWAS SSSVYGLNSK VPFSEKDRTD RPASLYAATK KAGEAIAHTY NHIYGLSITG LRFFTVYGPW GRPDMAYFFF TRDILTGKPI
301: TIFEGPDHGS VARDFTYIDD IVKGCLASLD TAKKSTGTGG KKKGAAQFRI FNLGNTSPVD VSKLVSILEK LLKVKAKRRV LPMPRNGD

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.