Factsheet for AT4G12250.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi
Any Predictor:	cytosol, endoplasmic reticulum, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	94.04	95.57
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	93.81	95.34
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	93.35	94.87
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	94.5	94.71
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	94.27	94.7
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	94.27	94.48
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	41.97	77.54
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	75.46	76.69
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	75.46	76.51
AT4G00110.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	75.0	76.05
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	67.2	75.52
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	74.77	74.94
AT1G02000.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	73.39	73.73
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	73.85	72.2
Solyc08g079440.1.1	Tomato	nucleus	73.62	72.13
AT2G45310.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	72.25	72.08
AT4G30440.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	66.06	67.13
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	66.06	66.98
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	69.04	65.58
AT3G23820.1	Thale cress	endoplasmic reticulum	65.37	61.96
Os03t0249500-01	Rice	plastid	66.74	60.12
TraesCS4A01G080300.1	Wheat	plastid	64.91	59.2
Zm00001d028427_P001	Maize	plastid	64.91	59.08
EER95171	Sorghum	plastid	64.91	58.96
TraesCS4D01G224000.1	Wheat	plastid	65.14	58.92
Zm00001d047915_P001	Maize	plastid	63.99	58.25
TraesCS4B01G223700.1	Wheat	plastid	65.14	57.84
HORVU4Hr1G063010.1	Barley	peroxisome	64.91	55.06
AT1G63180.1	Thale cress	cytosol	21.79	27.07
AT1G12780.1	Thale cress	cytoskeleton, cytosol, peroxisome	21.79	27.07
AT4G23920.1	Thale cress	cytosol	21.33	26.57
AT4G10960.1	Thale cress	golgi	21.1	26.21
AT1G64440.1	Thale cress	cytosol, golgi	19.95	25.0
AT4G20460.1	Thale cress	golgi, mitochondrion	21.79	23.11
AT1G30620.4	Thale cress	golgi, mitochondrion	22.02	22.91
AT5G44480.1	Thale cress	mitochondrion	22.02	22.02
AT2G34850.2	Thale cress	cytosol	11.01	20.34
AT3G14790.2	Thale cress	mitochondrion	21.79	14.24
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	21.56	14.05
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	21.33	13.94
AT3G28530.1	Thale cress	cytosol, nucleus	0.69	12.0
AT1G63000.1	Thale cress	cytosol	3.21	4.65

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EntrezGene:826833	UniProt:A0A178UUD1	ProteinID:AEE83108.1
ArrayExpress:AT4G12250	EnsemblPlantsGene:AT4G12250	RefSeq:AT4G12250	TAIR:AT4G12250	RefSeq:AT4G12250-TAIR-G	EnsemblPlants:AT4G12250.1
TAIR:AT4G12250.1	EMBL:AY050993	EMBL:AY150403	ProteinID:CAB45972.1	ProteinID:CAB78268.1	InterPro:Epimerase_deHydtase
Symbol:GAE5	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0016857
GO:GO:0032580	GO:GO:0050378	GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_192962.1	InterPro:Nuc_sugar_epim
ProteinID:OAO96977.1	PFAM:PF01370	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001016	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007095
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009001	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF21	UniProt:Q9STI6	SUPFAM:SSF51735	TMHMM:TMhelix
UniParc:UPI000004893C	SEG:seg	:	:	:	:

Description

GAE5GAE5 [Source:UniProtKB/TrEMBL;Acc:A0A178UUD1]

Coordinates

chr4:-:7289192..7291120

Molecular Weight (calculated)

48167.3 Da

IEP (calculated)

10.425

GRAVY (calculated)

-0.218

Length

436 amino acids

Sequence
(BLAST)

001: MSHLDDLPST PGKYKTDKVP PYGILHHHRY LRLSKLTLWA SLFLALFLFY LVLSPPPSPS RRNLNDSSSI SAAKYGGSHW EKQVRKSARP RSHGGLTVLV
101: TGASGFVGTH VSIALRRRGD GVLGLDNFNR YYDPKLKRAR QGLLERSGVF VVEGDINDAV LLRKLFDVVL FTHVMHLAAQ AGVRYAMQNP GSYVNSNIAG
201: FVNLLEVSKS ANPQPAIVWA SSSSVYGLNS KVPFSEKDRT DQPASLYAAT KKAGEGIAHT YNHIYGLSLT GLRFFTVYGP WGRPDMAYFF FTKDILKGKT
301: ITVFESPDKG SVARDFTYID DIVKGCLGAL DTAEKSTGSG GKKKGPAMFR IYNLGNTSPV PVTKLVTILE KLLKMKAKKK IMPLPRNGDV EFTHANITLA
401: QAELGYKPAV DLETGLKKFV KWYMGFYTGS KKKSSW

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.