Factsheet for VIT_02s0241g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	94.07	51.03
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	74.15	45.1
VIT_16s0022g01450.t01	Wine grape	mitochondrion	74.15	42.89
VIT_15s0048g00330.t01	Wine grape	plastid	77.12	42.62
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	77.12	42.33
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	77.54	42.26
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	76.69	42.19
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	76.69	42.09
AT4G12250.1	Thale cress	cytosol, endoplasmic reticulum, golgi	77.54	41.97
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	76.27	41.96
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	76.27	41.96
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	77.12	41.84
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	75.85	41.72
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	76.69	41.71
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	76.69	41.61
Solyc08g079440.1.1	Tomato	nucleus	78.39	41.57
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	78.39	41.48
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	76.27	38.71
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	74.58	38.34
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	69.92	36.59
TraesCS4A01G080300.1	Wheat	plastid	72.88	35.98
EER95171	Sorghum	plastid	72.88	35.83
Zm00001d028427_P001	Maize	plastid	72.46	35.7
TraesCS4D01G224000.1	Wheat	plastid	72.88	35.68
Zm00001d047915_P001	Maize	plastid	72.03	35.49
Os03t0249500-01	Rice	plastid	72.03	35.12
TraesCS4B01G223700.1	Wheat	plastid	72.88	35.03
HORVU4Hr1G063010.1	Barley	peroxisome	72.88	33.46
VIT_02s0025g01580.t01	Wine grape	golgi	21.61	14.66
VIT_02s0025g04210.t01	Wine grape	cytosol	21.61	14.57
VIT_02s0025g01560.t01	Wine grape	golgi	21.19	14.37
VIT_10s0003g05640.t01	Wine grape	golgi	19.07	10.77
VIT_03s0017g00980.t01	Wine grape	golgi	18.64	10.55
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	22.88	8.0
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	21.61	7.76
VIT_02s0025g04610.t01	Wine grape	cytosol	5.51	4.3

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	ProteinID:CCB47507	ProteinID:CCB47507.1	InterPro:Epimerase_deHydtase
UniProt:F6H5L8	EMBL:FN595238	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim
PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF1	SUPFAM:SSF51735	UniParc:UPI000210A388
ArrayExpress:VIT_02s0241g00180	EnsemblPlantsGene:VIT_02s0241g00180	EnsemblPlants:VIT_02s0241g00180.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:4802060..4803142

Molecular Weight (calculated)

26243.6 Da

IEP (calculated)

10.445

GRAVY (calculated)

-0.331

Length

236 amino acids

Sequence
(BLAST)

001: PAIVWASSSS VYGLNSKVPF SEKDRTDRPA SLYAATKKAG EAIAHTYNHI YGLSITGLRF FTVYGPWGRP DMAYFFFTRD ILTGKPITIF EGPDHGSVAR
101: DFTYIDDIVK GCLASLDTAK KSTGTGGKKK GAAQFRIFNL GNTSPVDVSK LVSILEKLLK VKAKRRVLPM PRNGDVQYTH ANISLAQREL GYKPTTDLES
201: GLKKFVRWYI TYQSKSKKKS SWALPICMNR KLEAST

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.