Factsheet for VIT_04s0069g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04610.t01
VIT_04s0069g00830.t01
VIT_08s0056g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	VIT_02s0025g04610.t01	AT1G63000.1	21798944
AT1G78570.1	VIT_04s0069g00830.t01	AT1G78570.1	21798944
AT1G78570.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g069110.2.1	Tomato	unclear	82.34	83.1
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	82.04	82.42
VIT_02s0025g04610.t01	Wine grape	cytosol	37.14	80.79
KRH16155	Soybean	cytosol	79.91	80.15
KRH04933	Soybean	cytosol, mitochondrion, plastid	78.08	79.66
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	79.76	78.33
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	79.0	78.05
CDX98494	Canola	cytosol, mitochondrion, plastid	76.71	78.02
CDX97601	Canola	cytosol, mitochondrion, plastid	76.56	77.86
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	76.1	77.64
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	79.15	77.61
CDY32340	Canola	cytosol, mitochondrion, peroxisome	75.95	77.61
CDY20084	Canola	cytosol, mitochondrion, peroxisome	75.95	77.48
AT3G14790.2	Thale cress	mitochondrion	78.39	77.21
CDY35137	Canola	cytosol, mitochondrion, plastid	78.69	77.16
CDY40003	Canola	cytosol, mitochondrion, plastid	78.69	77.16
CDY24092	Canola	cytosol, mitochondrion, peroxisome	77.93	76.99
CDY45116	Canola	cytosol, mitochondrion, peroxisome	77.93	76.99
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	78.08	76.91
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	78.54	76.79
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	78.84	76.74
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	78.39	76.64
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	78.39	76.64
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	77.47	76.54
EER95086	Sorghum	cytosol, mitochondrion, plastid	78.23	76.49
TraesCS4A01G099200.1	Wheat	cytosol	78.54	76.44
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	77.47	76.2
CDY60210	Canola	cytosol, mitochondrion, peroxisome	77.47	76.2
Zm00001d028654_P002	Maize	cytosol	77.93	76.19
Os03t0278200-01	Rice	nucleus, plasma membrane	78.23	76.15
TraesCS4B01G205100.3	Wheat	mitochondrion	78.39	75.51
TraesCS4D01G206000.1	Wheat	mitochondrion	78.39	75.51
CDX88455	Canola	cytosol, peroxisome, plastid	79.3	73.69
CDY25850	Canola	cytosol, mitochondrion, peroxisome	46.58	71.5
HORVU4Hr1G059120.2	Barley	plastid	78.39	71.23
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	63.47	68.93
VIT_02s0025g01560.t01	Wine grape	golgi	14.16	26.72
VIT_02s0025g01580.t01	Wine grape	golgi	13.85	26.15
VIT_02s0025g04210.t01	Wine grape	cytosol	12.94	24.29
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	14.61	22.17
VIT_03s0017g00980.t01	Wine grape	golgi	13.85	21.82
VIT_15s0048g00330.t01	Wine grape	plastid	14.16	21.78
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	7.76	21.61
VIT_16s0022g01450.t01	Wine grape	mitochondrion	13.39	21.57
VIT_10s0003g05640.t01	Wine grape	golgi	13.39	21.05
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	12.33	20.88
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	13.7	20.69
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	14.31	20.22
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	13.55	19.73

Protein Annotations

EntrezGene:100253745	wikigene:100253745	MapMan:3.13.6.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	ProteinID:CCB48871
ProteinID:CCB48871.1	UniProt:F6H9H8	EMBL:FN595500	EntrezGene:LOC100253745	wikigene:LOC100253745	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF04321	PFAM:PF16363	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	InterPro:RmlD-like-bd
SUPFAM:SSF51735	UniParc:UPI00015CC71A	ArrayExpress:VIT_04s0069g00830	EnsemblPlantsGene:VIT_04s0069g00830	EnsemblPlants:VIT_04s0069g00830.t01	unigene:Vvi.20463
RefSeq:XP_002271970	RefSeq:XP_002271970.1	RefSeq:XP_010648843.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:8940171..8942305

Molecular Weight (calculated)

74380.9 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.369

Length

657 amino acids

Sequence
(BLAST)

001: MSSGPAPYVP RNILITGAAG FIASHVTNRL VKNHPDYRIV ALDKLDYCSN VKNLGPSRSS SNFKFVKGDI VCADLVNHLL VAEDIDTIMH FAAQTHVDNS
101: FGNSFEFTNN NIYGTHVLLE ACKVTKRIKR FIHVSTDEVY GETDLDTDIG NPEASQLLPT NPYSATKAGA EMLVMAYHRS YGLPTITTRG NNVYGPNQFP
201: EKLIPKFILL AMKGEQLPIH GDGSNVRSYL YCEDVAEAFE VVLHKGVIGH VYNIGTKKER SVLDVAEDIC KLFRLDSKQA INFVHDRPFN DKRYFLDDQK
301: LKKLGWEERT PWEEGLRRTM EWYTKNPGWW GDVSAALHPH PRISMIAFPN DDQCFLQYGC DKDCSPASKS SGLKFLIYGR TGWIGGLLGK LCKDGGIEFE
401: YGKGRLQDRK TLMEDIRRVQ PTHVFNAAGV TGRPNVDWCE SHKVETIRTN VLGTLTLADV CKEQGLLMMN FATGCIFEYD EEHPEGSGVG FKEEDKPNFV
501: GSFYSKTKAM VEELLREYEN VCTLRVRMPI SSDLSNPRNF ITKIARYNKV VNIPNSMTVL DELLPISIEM AKRNCRGIWN FTNPGVVSHN EILEMYRDYI
601: DPGFEWVNFN LEEQAKVIVA PRSNNELDAS KLKKEFPELL SIKESIIKYV FEPNKKS

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.